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Report for CCDS20023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20023.1 Public Mus musculus 6 Dennd2a 23 108 98 CCDS HistoryNCBI Gene:209773Re-query CCDS DB by CCDS ID:20023.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036877.9 ENSMUSP00000045367.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036877.9Link to Ensembl Protein Viewer:ENSMUSP00000045367.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036877Re-query CCDS DB by Protein ID:ENSMUSP00000045367
Original member NCBI NM_172477.4 NP_766065.1 Updated not alive Link to Nucleotide Sequence:NM_172477.4Link to Protein Sequence:NP_766065.1Re-query CCDS DB by Nucleotide ID:NM_172477Re-query CCDS DB by Protein ID:NP_766065
Current member NCBI NM_172477.5 NP_766065.1 Accepted alive Link to Nucleotide Sequence:NM_172477.5Link to Protein Sequence:NP_766065.1Re-query CCDS DB by Nucleotide ID:NM_172477Re-query CCDS DB by Protein ID:NP_766065Link to BLAST:NP_766065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766065.1 1000 Q8C4S8 1000 100% 0 0

Chromosomal Locations for CCDS 20023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39463420 39463451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39464212 39464298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39465051 39465290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39465584 39465701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39468773 39468814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39470199 39470376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39480201 39480349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39483013 39483153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39485559 39485636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39487820 39487889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39488767 39488876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39492999 39493186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39494654 39494704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39495177 39495270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39496974 39497174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39506701 39506822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39508242 39508369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39522656 39523629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3003 nt):
ATGCTGGAGGCCAGAGTGGACATGCTCAGCTCCAACATGATCATCAGTGGCCCGGCTGCAGACCTTGGCG
CTAAAGAAGCCAGCAGACCCTGGAAGAAGCAGCTTAACAGTGTCCCGAACTCTGGACCATCCGCCCGAGC
CAGAGCCCAGCCCCAGCCCCTCAGCATAAAGGACAAGATATCCAAGTGGGAAGGCAAGAAGGAGCCACCC
GCCTCCGATCCCGCCAGGCAAACAGATGGCCAAGAGGACCACCTGCCATCCTGCAAGGTAGAGAGAAGAG
GCAGTGAGCTCACCAGAACTAAGAATGGAATGAGGCTTGAAACAGAGAGATTGCAAAATGACAGCCGGGC
AAGAACTGTGTGTCAGGACACAGAACAGTTGCCAGGCCCGAGGCCTATCGATGGACAGCCAGAGCTCAGC
CAGCACCGAGGTCGTGAGCTGAAACCCAGCGATCTACGCTTTCAAAGTGACCATCTCTCTGTGCTGAGAC
AGGTCAAGAGACTAGAGAAGGCCTTGAAGGATGGCTCCGCTGGCTTGGACCCTCAGATGCCGGGGACTTG
TTATTCACCTCACTGTCTGCCTGACAAAACAGAGGAAGACCTGCCCAGTCTTGAAAGCCACGAGAAGGGG
GGTGTCTTAGCAGCTGGCCGGAGAGCTCACCACCTGGAGGTCAGGGAGCCGGGCCCTGAGATTTCAGAGG
ATTGGAAAGGCCAGGAGAGTGTCTATAGGGGCTCCAGGTGGTACCCCCCAAAGCCTTTTATCAACCCTGT
CCCCAAGCCCCGCAGAACATTCAAACATGCTGGAGAAGGGGACAAGGATGTCAGCCCAGGCATCAGCTTC
AAGAAAGAGAAGAGAAACCTGCCTCCCCTGCCCTCTCTGCCTCCCCCTCCCCCACCGCTGCCTTCCTCCC
CTCCTCCCACTTCCGTGAATAGAAGACTGTGGACCGGGAGGCAGAGACCCAGTGCTGACCACAGAAAGTC
CTATGAGTTCGAGGACTTACTACAGTCTTCCTCAGAGAACAGCAGGGTGGACTGGTATGCACAGACCAAA
TTGGGACTCACACGCACTTTATCGGAGGAGAACGTCTATGAAGACATTCTAGATCCGCCAATGAAGGAAA
ATCCTTATGAAGATGTGGAGCTGCATGGCCGCTGCCTGGGCAAGAAGTGTGTCTTGACTTTCCCCGCATC
TCCCACCTCTTCCATCCCGGACACGTCCACCAAGCAGTCCTTGTCCAAGTCTGCATTTTTCCGGCAGAAC
TCAGAAAGAAGAAACTTGAAGCTGTTGGACACTAGGAAGCTTAGTCGGGATGGAGCTGGGTCCCCGCTGA
GGACCAGTCCTCCCTCTACACCTAGCAGCCCGGACGACACGTTCTTTAACCTTGGAGACCTACAGAATGG
CAGGAAGAAGAAAAAGATCCCCAGGCTGGTATTGAGGATCAATGCCATTTATGAGGCCCGGAGAGGAAAG
AAACGGGTGAAGAGGCTATCCCAGTCCACGGAGAGCAACTCAGGAAAAGTGACAGATGAGAACAGTGAGT
CTGACAGCGACACAGAGGAGAAGCTGAAAGCTCACAGCCAGCGCCTGGTCAATGTGAAGTCTCGCCTGAA
GCAGGCCCCTCGATACTCATCGCTTGACCGGGATCTCATTGAGTACCAAGAGAGGCAACTCTTCGAGTAC
TTCGTGGTTGTGTCTCTGCACAAGAAGCAGGCAGGGGCCGCCTACGTGCCAGAGCTCACCCAGCAATTTC
CTCTGAAGTTAGAAAAGTCATTCAAGTTCATGAGAGAGGCTGAGGACCAGCTGAAGGCTATCCCCCAGTT
CTGCTTCCCCGATGCTAAGGACTGGGCTCCTGTCCAGGAGTTTACCAGTGAAACATTCTCGTTTGTCTTA
ACTGGAGAAGACGGGAGCAGAAGGTTCGGTTACTGCCGAAGACTGCTGCCTGGGGGCAAAGGGAAGCGGC
TTCCTGAGGTTTATTGCATTGTGAGCCGCCTGGGATGCTTCAGCCTCTTTTCAAAGATCTTGGATGAGGT
GGAAAAGAGGAGAGGAATCTCCCCTGCCCTCGTGCAGCCCCTCATGAGGAGCGTCATGGAAGCCCCTTTC
CCAGCCCTGGGCAAAACCATCATTGTCAAGAACTTCCTGCCAGGCTCGGGGACTGAGGTGATTGAGCTGT
GCCGACCGCTGGACTCCCGGCTAGAGCACGTGGACTTTGAGTCTCTGTTCTCCTCCCTCAGTGTCCGACA
CTTGGTCAGTGTCTTTGCCTCCCTCCTTCTGGAAAGGAGAGTCATCTTCATCGCAGACAAACTCAGCACT
CTGTCCAAATGCTGCCACGCAATGGTGGCGCTCATCTACCCCTTCAGCTGGCAGCACACCTACATCCCGG
TGCTACCGCCCGCCATGATCGACATAGTGTGCTCGCCCACGCCCTTCCTCATCGGGCTGCTCTCCAGCTC
GCTGCCTCTGCTCAGGGAGCTGCCACTGGAAGAGGTTCTCGTGGTCGATCTCATCAATGATCGGTTCCTC
AGGCAGATGGAGGACGAGGATTCCATTCTGCCCCGGAAGCTTCAGGTTGCCCTGGAACACATTCTGGAGC
AGAGGAATGACCTGGCCTGTGACCAGGATGGAGGCCCGCTGGACTGTGTGCACGGCCCTGAATCCAGTTC
CTTGAGTGAGGTGGTGTCCGAAGCCTTTGTCCGCTTTTTTGTGGAGATTGTGGGCCACTACCCCCTGTTC
CTGACATCGGGTGAGGAGAGAAGCCTGCAACGAGAGGCCTTCAGAAAAGCTGTCTCCTCTAAGAGCCTGC
GGCGCTTCCTGGAGGTCTTCATGGAGACCCAGACGTTCCGTGGCTTCATCCAGGAGCGGGAACTACGCAG
GCAAGATGCCAAAGGTCTGTTTGAAGTCCGAGCCCAGGAGTACCTGGAAACCCTGCCCAGCGGAGAGCAC
AGCGGAGTCAATAAATTCCTCAAGGGACTGGGCAATAAAATGAAGTTTCTCCACAAGAAATAA

Translation (1000 aa):
MLEARVDMLSSNMIISGPAADLGAKEASRPWKKQLNSVPNSGPSARARAQPQPLSIKDKISKWEGKKEPP
ASDPARQTDGQEDHLPSCKVERRGSELTRTKNGMRLETERLQNDSRARTVCQDTEQLPGPRPIDGQPELS
QHRGRELKPSDLRFQSDHLSVLRQVKRLEKALKDGSAGLDPQMPGTCYSPHCLPDKTEEDLPSLESHEKG
GVLAAGRRAHHLEVREPGPEISEDWKGQESVYRGSRWYPPKPFINPVPKPRRTFKHAGEGDKDVSPGISF
KKEKRNLPPLPSLPPPPPPLPSSPPPTSVNRRLWTGRQRPSADHRKSYEFEDLLQSSSENSRVDWYAQTK
LGLTRTLSEENVYEDILDPPMKENPYEDVELHGRCLGKKCVLTFPASPTSSIPDTSTKQSLSKSAFFRQN
SERRNLKLLDTRKLSRDGAGSPLRTSPPSTPSSPDDTFFNLGDLQNGRKKKKIPRLVLRINAIYEARRGK
KRVKRLSQSTESNSGKVTDENSESDSDTEEKLKAHSQRLVNVKSRLKQAPRYSSLDRDLIEYQERQLFEY
FVVVSLHKKQAGAAYVPELTQQFPLKLEKSFKFMREAEDQLKAIPQFCFPDAKDWAPVQEFTSETFSFVL
TGEDGSRRFGYCRRLLPGGKGKRLPEVYCIVSRLGCFSLFSKILDEVEKRRGISPALVQPLMRSVMEAPF
PALGKTIIVKNFLPGSGTEVIELCRPLDSRLEHVDFESLFSSLSVRHLVSVFASLLLERRVIFIADKLST
LSKCCHAMVALIYPFSWQHTYIPVLPPAMIDIVCSPTPFLIGLLSSSLPLLRELPLEEVLVVDLINDRFL
RQMEDEDSILPRKLQVALEHILEQRNDLACDQDGGPLDCVHGPESSSLSEVVSEAFVRFFVEIVGHYPLF
LTSGEERSLQREAFRKAVSSKSLRRFLEVFMETQTFRGFIQERELRRQDAKGLFEVRAQEYLETLPSGEH
SGVNKFLKGLGNKMKFLHKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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