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Report for CCDS38040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38040.1 Public Mus musculus 2 Dhtkd1 23 108 98 CCDS HistoryNCBI Gene:209692Re-query CCDS DB by CCDS ID:38040.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38040.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026924.6 ENSMUSP00000026924.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026924.6Link to Ensembl Protein Viewer:ENSMUSP00000026924.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026924Re-query CCDS DB by Protein ID:ENSMUSP00000026924
Original member Current member EBI ENSMUST00000095147.8 ENSMUSP00000092769.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095147.8Link to Ensembl Protein Viewer:ENSMUSP00000092769.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095147Re-query CCDS DB by Protein ID:ENSMUSP00000092769
Original member Current member NCBI NM_001081131.2 NP_001074600.1 Accepted alive Link to Nucleotide Sequence:NM_001081131.2Link to Protein Sequence:NP_001074600.1Re-query CCDS DB by Nucleotide ID:NM_001081131Re-query CCDS DB by Protein ID:NP_001074600Link to BLAST:NP_001074600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074600.1 921 A2ATU0 921 100% 0 0

Chromosomal Locations for CCDS 38040.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 5898708 5898812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5899911 5899996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5902329 5902498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5902968 5903050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5903960 5904124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5910302 5910408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5911814 5911964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5913512 5913651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5914810 5914894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5917673 5917985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5919440 5919638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5921665 5921836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5923869 5924138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5929638 5929832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5930775 5930986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5932387 5932542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 5942515 5942671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2766 nt):
ATGGCATCGGCCGCCACTGTGGCAGCTGCAGGGAGAGCTCTCCGCCGGGCCGTTCTGCTTCTCCGGCGCG
GTTACCAGACGGAGAGGGGCGTCTATGGATACCGGCCTAGGAAAGCCAAGAGCGGAGAGCCTCGAGGCGA
CCGTGCACGCCCCTCAGTTGACCATGGCCTTGCCAGGCTGGTGACAGTGTATTGTGAGCATGGCCACAAA
GCTGCCCAGATCAACCCTCTCTTCCCTGGACAAGCCCTCCTGGATACTGTGCCTGAAATCCAAGCTCTTG
TCCGGACACTCCAGGGACCCTTCACTACCACAGGACTGTTAAACCTGGGCAAAGAAGCAGCTTCTCTTGA
GGAAGTATTGGCCTATCTGAACCATATCTACTGTGGCCCAATTTCTATCGAAACCGCCCAGCTTCAGAGC
CAGGAAGAGAGAGACTGGTTTGCCAGAAGGTTTGAGGAACTGAAAAAGGAGACGTTCACCACAGAAGAAC
GAAAATACCTGTCCAAACTATTGCTAGAGTCTCAGGAGTTTGACCACTTTTTGGCCACCAAGTTTGCCAC
GGTGAAGAGATACGGCGGTGAAGGGGCAGAGAGCATGATGGGCTTTTTTCATGAGTTGCTGAAATTGTCA
GCCTATGGCGGTATAACCGACATCATTATCGGGATGCCCCATAGAGGGAGGTTGAATTTGTTGACAGGCC
TTCTGCAGTTACCTCCGGAGCTGATGTTCCGTAAAATGCGAGGCTTAAGCGAGTTTCCAGAGAATGTTGC
CACCATTGGTGATGTCCTGTCCCACCTGACCTCCTCAGTGGACCTAGACTTCGGTGCCCATCAACCCCTC
CATGTGACAATGCTGCCCAACCCCTCACATCTGGAAGCTGTTAACCCCGTGGCTGTAGGGAAAACTCGTG
GCAGGCAGCAGTCTCGGGAAGATGGGGACTACTCCCCGAATGGTTCTGCTCAGCCTGGGGACAAAGTCAT
ATGCCTGCAGGTCCACGGTGACGCTTCCTTCTGCGGTCAGGGGATTGTCCTTGAGACGTTCACACTCTCT
AATCTTCCACACTTCAGAATTGGTGGGAGCATCCATCTAATTGTCAATAACCAGCTGGGCTACACCACTC
CTGCAGAGAGAGGAAGGTCGTCCTTATACAGCTCTGATATCGGAAAGCTCGTAGGCTGTGCCATCATCCA
TGTCAATGGAGACAGCCCAGAGGAAGTGGTCCGAGCGACACGCCTGGCTTTTGAATATCAGCGCCAGTTC
CGCAAGGATGTGATTGTTGATTTGTTATGCTATAGGCAGTGGGGTCATAACGAGCTAGACGAGCCTTTCT
TCACCAACCCAGTCATGTACAAAATCATCAGAGCCCGCAAGAGCATTCCTGATACCTACGCAGAGCACCT
CATTGCCAGTGGACTCATGACCCAGGAGGAGGTTTCCGACATAAAAACCTCCTACTATACCAAGTTAAAT
GACCACTTGGCCAATGTGGCCCACTACAGCCCCCCGGCCACTAACCTGCAGGCCCGCTGGCAGGGCCTGG
TGCAGCCAGAAGCATGTGTCACCACCTGGGACACAGGGGTGCCTCTAGAGCTGCTGCGGTTTATTGGTGT
GAAGTCCGTGGAGGTTCCAGAGGAACTGCAGGTGCACAGCCACCTTCTAAAGATGTATGTTCAGTCAAGA
ATGGAGAAGGTGAAGAATGGAAGCGGTCTAGACTGGGCCACCGCAGAGACACTTGCCTTGGGCTCCTTAC
TCGCTCAAGGTTTCAATGTTCGTCTGAGCGGCCAAGATGTTGGCCGTGGGACTTTTAGTCAAAGGCATGC
CATGGTGGTTTGCCAGGACACTGATGATGCCTACATCCCGCTGAACCACATGGACCCCAACCAGAAGGGT
TTTCTGGAGGTTAGCAACAGCCCCCTGTCAGAAGAGGCTGTCCTGGGATTTGAATATGGGATGAGCATCG
AAAGCCCCACGTTGCTGCCCCTCTGGGAAGCTCAGTTTGGCGATTTCTTCAATGGAGCCCAGATCATCTT
TGACACATTCATCTCAGGAGGAGAGGCCAAGTGGCTCCTGCAGAGTGGCCTCGTCATCCTCCTTCCACAT
GGCTATGATGGAGCTGGGCCTGAGCACTCATCTTGTCGGATAGAGCGCTTCTTGCAGATGTGCGATAGTG
CAGAAGAAGGTGTGGACAGCGACACTGTGAACATGTTTGTGGTACACCCGACCACCCCTGCTCAGTACTT
CCATTTGCTAAGAAGGCAGATGATTCGGAACTTCAGAAAACCTCTCATTGTTGCATCTCCAAAAATGTTA
CTCAGGTACCCTGCAGCTGTGTCAACTCTTGAGGAAATGGCACCAGGAACAGCATTCAAACCTGTCATTG
GTGATTCATCAGTAGACCCAAAAAATGTTAAAACCCTCATATTCTGCTCCGGCAAACATTTTTATGCCCT
GCTGAAGCAAAGAGAGTCTCTGGGGACTAAGAAACATGATTTTGCCATCATTCGACTAGAGGAGCTCTGC
CCTTTCCCGCTGGATGCATTACAACAAGAGATGAGCAAATATAAACATGTTCGAGATGTCATCTGGAGTC
AGGAGGAGCCGCAGAACATGGGTCCATGGTCTTTTGTTTCTCCAAGGTTTGAAAAACAACTGGCTTGCAG
GCTCCGTCTTGTAAGCCGACCCCCTTTGCCAGCACCTGCGGTAGGAATTGGCACAGTGCACCAGCAGCAG
CACGAAGACATTCTCTCCAAGACCTTCACTCAGTAA

Translation (921 aa):
MASAATVAAAGRALRRAVLLLRRGYQTERGVYGYRPRKAKSGEPRGDRARPSVDHGLARLVTVYCEHGHK
AAQINPLFPGQALLDTVPEIQALVRTLQGPFTTTGLLNLGKEAASLEEVLAYLNHIYCGPISIETAQLQS
QEERDWFARRFEELKKETFTTEERKYLSKLLLESQEFDHFLATKFATVKRYGGEGAESMMGFFHELLKLS
AYGGITDIIIGMPHRGRLNLLTGLLQLPPELMFRKMRGLSEFPENVATIGDVLSHLTSSVDLDFGAHQPL
HVTMLPNPSHLEAVNPVAVGKTRGRQQSREDGDYSPNGSAQPGDKVICLQVHGDASFCGQGIVLETFTLS
NLPHFRIGGSIHLIVNNQLGYTTPAERGRSSLYSSDIGKLVGCAIIHVNGDSPEEVVRATRLAFEYQRQF
RKDVIVDLLCYRQWGHNELDEPFFTNPVMYKIIRARKSIPDTYAEHLIASGLMTQEEVSDIKTSYYTKLN
DHLANVAHYSPPATNLQARWQGLVQPEACVTTWDTGVPLELLRFIGVKSVEVPEELQVHSHLLKMYVQSR
MEKVKNGSGLDWATAETLALGSLLAQGFNVRLSGQDVGRGTFSQRHAMVVCQDTDDAYIPLNHMDPNQKG
FLEVSNSPLSEEAVLGFEYGMSIESPTLLPLWEAQFGDFFNGAQIIFDTFISGGEAKWLLQSGLVILLPH
GYDGAGPEHSSCRIERFLQMCDSAEEGVDSDTVNMFVVHPTTPAQYFHLLRRQMIRNFRKPLIVASPKML
LRYPAAVSTLEEMAPGTAFKPVIGDSSVDPKNVKTLIFCSGKHFYALLKQRESLGTKKHDFAIIRLEELC
PFPLDALQQEMSKYKHVRDVIWSQEEPQNMGPWSFVSPRFEKQLACRLRLVSRPPLPAPAVGIGTVHQQQ
HEDILSKTFTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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