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Report for CCDS36082.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36082.1 Public Mus musculus 10 Stat6 23 108 98 CCDS HistoryNCBI Gene:20852Re-query CCDS DB by CCDS ID:36082.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36082.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092074.11 ENSMUSP00000089708.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092074.11Link to Ensembl Protein Viewer:ENSMUSP00000089708.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000092074Re-query CCDS DB by Protein ID:ENSMUSP00000089708
Original member Current member NCBI NM_009284.2 NP_033310.2 Accepted alive Link to Nucleotide Sequence:NM_009284.2Link to Protein Sequence:NP_033310.2Re-query CCDS DB by Nucleotide ID:NM_009284Re-query CCDS DB by Protein ID:NP_033310Link to BLAST:NP_033310.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033310.2 837 P52633 837 100% 0 0

Chromosomal Locations for CCDS 36082.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127646912 127647027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127647685 127647823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127648106 127648189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127650696 127650834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127650953 127651005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127651157 127651305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127651950 127652081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127652191 127652379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127652985 127653072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127653207 127653329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127654926 127655018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127655297 127655503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127656924 127657018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127657108 127657244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127657556 127657702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127658197 127658260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127658357 127658461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127658629 127658700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127659433 127659498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127659589 127659717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127659795 127659981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGTCTCTGTGGGGCCTAATTTCCAAGATGTCCCCAGAAAAACTGCAACGGCTCTATGTTGACTTTCCAC
AACGCCTACGGCATCTCCTGGCTGACTGGCTGGAGAGCCAGCCCTGGGAGTTCCTGGTCGGTTCAGATGC
TTTCTGTTACAACATGGCCAGTGCCCTACTTTCTGCCACAGTCCAGCGTCTTCAGGCCACTGCTGGAGAG
CAGGGGAAGGGAAACAGCATCTTGCCGCACATCAGCACCTTGGAGAGCATCTATCAGAGGGACCCCCTGA
AGCTGGTGGCCACCATCAGACAAATACTTCAAGGGGAGAAAAAAGCTGTTATAGAAGAGTTCCGCCACCT
GCCAGGGCCCTTCCATCGGAAGCAGGAAGAACTCAAGTTTACTACAGCCCTCGGAAGGCTTCAGCATCGA
GTAAGGGAGACCCGGCTTCTCCGAGAATCTCTGCAGCAAGGGGCTAAGACTGGACAAGTGTCTCTGCAGA
ATTTGATAGACCCTCCTGTCAATGGTCCTGGTCCAAGTGAGGACCTGGCCACCATGCTGCAGGGGACTGT
GGGGGACCTGGAGGCCACCCAGGCCCTGGTGCTGAAAAGGATTCAGATTTGGAAGCGGCAGCAACAGCTG
GCAGGGAATGGCACACCCTTTGAGGAGAGCCTAGCAGGGCTGCAGGAGAGGTGTGAAAGCCTGGTGGAAA
TTTATTCCCAGCTGCAGCAGGAGATTGGGGCAGCCAGTGGAGAACTGGAACCCAAGACCCGGGCATCGCT
GATAAGCCGTCTGGATGAAGTCCTGCGAACCCTTGTGACCAGCTCTTTCCTGGTGGAGAAGCAGCCCCCG
CAGGTTCTGAAGACACAGACTAAGTTCCAGGCTGGGGTTCGATTCCTGCTGGGTCTGCAGTTTCTAGGGA
CCTCAGCCAAGCCTCCAATGGTCAGAGCTGACATGGTGACAGAGAAACAGGCCAGAGAACTAAGCCTGGC
CCAGGGGCCCGGGACTGGAGTGGAGAGCACAGGAGAGATCATGAACAACACGGTGCCCCTGGAGAACAGC
ATTCCCAGCAACTGCTGCTCCGCCCTGTTCAAGAACCTGCTCCTGAAGAAAATAAAGCGCTGTGAGCGGA
AGGGCACAGAGTCTGTCACCGAGGAGAAGTGTGCTGTGCTCTTCTCCACGAGCTTCACATTGGGCCCCAA
CAAACTTCTCATCCAGCTTCAGGCCCTGTCTCTGCCCTTGGTGGTCATCGTGCATGGTAACCAAGACAAC
AACGCCAAAGCTACCATCCTATGGGACAATGCCTTCTCTGAGATGGACCGAGTGCCCTTTGTGGTGGCTG
AGCGAGTGCCCTGGGAGAAGATGTGTGAAACCCTAAACCTCAAGTTTATGGCTGAGGTGGGGACCAGCCG
GGGACTGCTTCCAGAGCACTTCCTGTTCCTCGCCCAGAAGATCTTCAACGACAACAGCCTCAGTGTGGAG
GCCTTTCAGCACCGCTGTGTGTCCTGGTCACAGTTCAATAAGGAGATCCTGCTGGGCCGAGGCTTCACAT
TTTGGCAGTGGTTTGATGGTGTCCTGGACCTCACCAAACGCTGTCTCCGGAGCTACTGGTCAGATCGGCT
GATCATTGGCTTTATTAGTAAGCAATATGTCACTAGCCTTCTCCTCAATGAGCCAGATGGGACCTTCCTC
CTCCGCTTTAGCGACTCTGAGATCGGGGGCATCACCATTGCACACGTCATCCGGGGTCAGGATGGCTCCT
CACAGATAGAGAACATCCAGCCATTTTCTGCCAAAGACCTGTCCATTCGCTCACTGGGGGACCGGATCCG
GGATCTTGCTCAGTTAAAAAACCTCTACCCCAAGAAACCCAAAGATGAGGCTTTCCGGAGTCACTATAAG
CCCGAACAGATGGGGAAGGACGGGAGGGGTTATGTCTCTACTACTATCAAGATGACTGTGGAAAGGGACC
AGCCCCTTCCTACTCCAGAGCCCCAGATGCCTGCCATGGTGCCACCTTATGATCTTGGAATGGCCCCTGA
TGCTTCCATGCAACTCAGCTCAGATATGGGGTATCCTCCACAGTCCATCCACTCATTTCAGAGCCTAGAA
GAGTCCATGAGTGTACTGCCATCTTTTCAGGAGCCTCACCTGCAAATGCCCCCCAACATGAGCCAGATAA
CCATGCCCTTTGACCAGCCTCACCCCCAGGGTCTGCTGCAGTGCCAGTCCCAGGAACATGCTGTGTCCAG
CCCTGAACCCATGCTTTGCTCAGATGTGACTATGGTAGAGGACAGCTGCCTAACTCAGCCTGTGGGAGGT
TTCCCCCAAGGCACCTGGGTCAGTGAAGACATGTACCCTCCCCTGATGCCTCCCACTGAACAGGACCTCA
CCAAGCTTCTCCTGGAGAACCAAGGGGAGGCAGGAGGGTCCTTAGGAAGCCAGCCCCTCCTGCAACCATC
TCCTTATGGGCAATCAGGGATCTCACTGTCCCACCTGGACCTAAGGACCAACCCCAGCTGGTGA

Translation (837 aa):
MSLWGLISKMSPEKLQRLYVDFPQRLRHLLADWLESQPWEFLVGSDAFCYNMASALLSATVQRLQATAGE
QGKGNSILPHISTLESIYQRDPLKLVATIRQILQGEKKAVIEEFRHLPGPFHRKQEELKFTTALGRLQHR
VRETRLLRESLQQGAKTGQVSLQNLIDPPVNGPGPSEDLATMLQGTVGDLEATQALVLKRIQIWKRQQQL
AGNGTPFEESLAGLQERCESLVEIYSQLQQEIGAASGELEPKTRASLISRLDEVLRTLVTSSFLVEKQPP
QVLKTQTKFQAGVRFLLGLQFLGTSAKPPMVRADMVTEKQARELSLAQGPGTGVESTGEIMNNTVPLENS
IPSNCCSALFKNLLLKKIKRCERKGTESVTEEKCAVLFSTSFTLGPNKLLIQLQALSLPLVVIVHGNQDN
NAKATILWDNAFSEMDRVPFVVAERVPWEKMCETLNLKFMAEVGTSRGLLPEHFLFLAQKIFNDNSLSVE
AFQHRCVSWSQFNKEILLGRGFTFWQWFDGVLDLTKRCLRSYWSDRLIIGFISKQYVTSLLLNEPDGTFL
LRFSDSEIGGITIAHVIRGQDGSSQIENIQPFSAKDLSIRSLGDRIRDLAQLKNLYPKKPKDEAFRSHYK
PEQMGKDGRGYVSTTIKMTVERDQPLPTPEPQMPAMVPPYDLGMAPDASMQLSSDMGYPPQSIHSFQSLE
ESMSVLPSFQEPHLQMPPNMSQITMPFDQPHPQGLLQCQSQEHAVSSPEPMLCSDVTMVEDSCLTQPVGG
FPQGTWVSEDMYPPLMPPTEQDLTKLLLENQGEAGGSLGSQPLLQPSPYGQSGISLSHLDLRTNPSW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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