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Report for CCDS15151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15151.1 Public Mus musculus 1 Asb18 23 108 98 CCDS HistoryNCBI Gene:208372Re-query CCDS DB by CCDS ID:15151.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086882.7 ENSMUSP00000084095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086882.7Link to Ensembl Protein Viewer:ENSMUSP00000084095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086882Re-query CCDS DB by Protein ID:ENSMUSP00000084095
Original member Current member NCBI NM_139152.2 NP_631891.1 Accepted alive Link to Nucleotide Sequence:NM_139152.2Link to Protein Sequence:NP_631891.1Re-query CCDS DB by Nucleotide ID:NM_139152Re-query CCDS DB by Protein ID:NP_631891Link to BLAST:NP_631891.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631891.1 467 Q8VHA6-1 467 100% 0 0

Chromosomal Locations for CCDS 15151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 89952678 89952863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89954389 89954502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89968213 89968720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89992958 89993225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 89996212 89996334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90014373 90014577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGTCCAGCTGGGACTCGCCCCCAGATTACCCCCTCAGCTCAGACATAGTGAGGAGATTAAAGTCTGCTC
TGGCCACTGGGGACGAGGACACTGTACAGAAGCTGATCTGCACTGAGGTGGAGCCTGTGGACGCCGTAAT
AGAACTTGCTAATGATGACTGGATGAAGGAGCCCTCAGCCGAGCTGCCCACGGGCGTACTGCTAGGAGAC
CTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACG
GAGAGATGGAATGGCAGGTGACATCCCTGGCCACCTTTGGGCTCTCAGGCCTTTGGACCCTGGAGTACCA
GCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTC
AGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTCGTGGTGCCCTACATGAGGCCTGTCTCGGGAACC
ATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGC
ACCCCTGCACCTATGCCGCACACCCGCCTCGCTTGGGTGCGCTCGGGAGCTGCTGGAGCACGGCGCGACA
GTCCAGCTGGAGGGTGGCCCTGGCCGAGACACACCGCTGCACGTGGCGGCCCAGCGCGGCCTGGACGAGC
ACGCGCAACTCTACCTGGGCTTCGGCGCGCGAGTGGACGCGAGGAACGGCCGGGGCGAAACGGCCCTTAG
CGCAGCATGCGGAGCGGCGGCGCGGAGCCCCGACGAGCACGCGCGCTGCCTGCGCCTGTGCGCGCTCCTT
CTGCGCGGCGGCGCGGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCC
ACGCGCGCCCCGGCCTGTGCACGCTCCTGCTGCGGCACGGCGCCGACGCGGGCGCGCTCGACTATGGTGG
CGCGTCCCCGCTGGCGCGCGCGCTGCAGACGGCCACGTGCGCGCCCCCGACAGCGCCGCAGCGCACGGTC
CAGGTGCTACTAAATCACGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATGTG
CACAGGTGCCTGAAGTCATTGAAGTTCTGTTCAACTCCTACACTCAGCTCCCAGTGTCTGAGTCCTGGCG
GGAAGCCATCCCTGAAGAAGTATACCAGATGCACAAGCCTTTCTACAGGTCTCTCTTCGCCTTGGCACAC
ACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAAGGAGAGCGTTCACC
TTGTGCCCCAGCTACCATTACCTGAGACTCTGCAAAATTACCTGCTTTTGGAGCCAGAGGGTGTTTTGTG
TTGA

Translation (467 aa):
MSSWDSPPDYPLSSDIVRRLKSALATGDEDTVQKLICTEVEPVDAVIELANDDWMKEPSAELPTGVLLGD
LDHIRLLMDQCFWDANAVFEISNGEMEWQVTSLATFGLSGLWTLEYQRELTTPLCIAAAHGHESCVRHLL
SRKADPNASPGGRGALHEACLGNHTACARLLLQHGADPDLLNSEGLAPLHLCRTPASLGCARELLEHGAT
VQLEGGPGRDTPLHVAAQRGLDEHAQLYLGFGARVDARNGRGETALSAACGAAARSPDEHARCLRLCALL
LRGGAAADARDEDERSPLHKACGHARPGLCTLLLRHGADAGALDYGGASPLARALQTATCAPPTAPQRTV
QVLLNHGSRSVWPDAFPKVLRTCAQVPEVIEVLFNSYTQLPVSESWREAIPEEVYQMHKPFYRSLFALAH
TPRCLQHLCRCTIRKLFGKESVHLVPQLPLPETLQNYLLLEPEGVLC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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