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Report for CCDS49675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49675.1 Public Mus musculus 15 Mchr1 23 108 98 CCDS HistoryNCBI Gene:207911Re-query CCDS DB by CCDS ID:49675.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166855.2 ENSMUSP00000126191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166855.2Link to Ensembl Protein Viewer:ENSMUSP00000126191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166855Re-query CCDS DB by Protein ID:ENSMUSP00000126191
Original member Current member NCBI NM_145132.2 NP_660114.1 Accepted alive Link to Nucleotide Sequence:NM_145132.2Link to Protein Sequence:NP_660114.1Re-query CCDS DB by Nucleotide ID:NM_145132Re-query CCDS DB by Protein ID:NP_660114Link to BLAST:NP_660114.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660114.1 353 Q8JZL2-1 353 100% 0 0

Chromosomal Locations for CCDS 49675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81235774 81235855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81237133 81238112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGATCTGCAAGCCTCGTTGCTGTCCACTGGCCCCAATGCCAGCAACATCTCCGATGGCCAGGATAATT
TCACATTGGCGGGGCCACCTCCTCGCACAAGGAGTGTCTCCTACATCAACATCATCATGCCTTCAGTGTT
TGGTACCATCTGTCTCCTGGGCATTGTGGGAAACTCCACAGTCATTTTTGCCGTGGTGAAGAAATCCAAG
CTGCACTGGTGCAGCAACGTCCCTGACATCTTCATCATCAACCTCTCTGTGGTGGATCTGCTTTTCCTGC
TGGGCATGCCTTTCATGATCCACCAGCTCATGGGTAATGGTGTCTGGCACTTTGGGGAAACCATGTGCAC
CCTCATCACAGCCATGGACGCCAACAGTCAGTTCACCAGCACCTACATCCTGACTGCTATGGCCATTGAC
CGCTACTTGGCCACCGTCCATCCCATCTCCTCCACCAAGTTCCGGAAGCCCTCCATGGCCACCCTGGTGA
TCTGCCTCCTGTGGGCTCTCTCGTTCATTAGCATCACTCCTGTGTGGCTCTATGCCAGGCTTATCCCCTT
CCCAGGGGGTGCTGTGGGCTGTGGCATCCGCCTACCAAACCCAGATACTGATCTTTACTGGTTCACTCTG
TATCAGTTTTTCCTGGCCTTCGCCCTTCCGTTTGTGGTCATCACTGCTGCGTACGTGAAAATACTACAGC
GCATGACGTCTTCGGTGGCCCCAGCCTCTCAACGCAGCATCCGGCTTCGGACAAAGAGGGTGACCCGCAC
AGCCATTGCCATCTGTCTGGTCTTCTTTGTGTGCTGGGCGCCCTACTACGTGCTGCAGCTGACCCAGTTG
TCCATCAGCCGCCCGACCCTCACATTCGTCTACCTGTACAATGCGGCTATCAGCTTGGGCTATGCCAACA
GCTGCCTCAATCCCTTTGTGTACATAGTACTCTGTGAGACCTTTCGAAAACGCTTGGTGCTGTCGGTGAA
GCCCGCGGCCCAGGGGCAGCTTCGCACGGTCAGCAATGCTCAGACAGCTGACGAGGAGAGGACAGAAAGC
AAAGGCACCTGA

Translation (353 aa):
MDLQASLLSTGPNASNISDGQDNFTLAGPPPRTRSVSYINIIMPSVFGTICLLGIVGNSTVIFAVVKKSK
LHWCSNVPDIFIINLSVVDLLFLLGMPFMIHQLMGNGVWHFGETMCTLITAMDANSQFTSTYILTAMAID
RYLATVHPISSTKFRKPSMATLVICLLWALSFISITPVWLYARLIPFPGGAVGCGIRLPNPDTDLYWFTL
YQFFLAFALPFVVITAAYVKILQRMTSSVAPASQRSIRLRTKRVTRTAIAICLVFFVCWAPYYVLQLTQL
SISRPTLTFVYLYNAAISLGYANSCLNPFVYIVLCETFRKRLVLSVKPAAQGQLRTVSNAQTADEERTES
KGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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