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Report for CCDS87895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87895.1 Public Mus musculus 1 BC034090 23 108 98 CCDS HistoryNCBI Gene:207792Re-query CCDS DB by CCDS ID:87895.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87895.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186156.6 ENSMUSP00000139623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186156.6Link to Ensembl Protein Viewer:ENSMUSP00000139623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186156Re-query CCDS DB by Protein ID:ENSMUSP00000139623
Original member Current member NCBI NM_001370865.1 NP_001357794.1 Accepted alive Link to Nucleotide Sequence:NM_001370865.1Link to Protein Sequence:NP_001357794.1Re-query CCDS DB by Nucleotide ID:NM_001370865Re-query CCDS DB by Protein ID:NP_001357794Link to BLAST:NP_001357794.1

Chromosomal Locations for CCDS 87895.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155213520 155213713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155217382 155217566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155218260 155218387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155221335 155221587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155223275 155223431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155224911 155226448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155232446 155232589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155240736 155240799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155241425 155242326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155244186 155244229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3609 nt):
ATGGAGGGGATGGAGGCGGCGGCCAAGCCCGCGCGCCGCTCTCAAGCATCCAGGCCAGGGAGCACAACAA
GCCCCACGCAAGTGACTCCAGCCATGGCCAGAGATGGCGCTGAGCAGCCAGACAGTGGACCTCTCCCGAG
ACCTTCACCCTGCCCCCAGGAAGACCGAGCATCTAACCTGATGCCCCCCAAGCCTCCCAGGACATGGGGG
CTGCAGCTCCAAGGTCCTTCTGTGCTGGAGTCCAAGGTAAAGGCCTTGAAGGAGAAAATGACAGCAGGAA
AACAAGGGACAGATCCCCGTCCCACTTCCTATGAGCGTCCATCCCCTACAAAATCCAAATGCCACCAAGT
CAAGACTGGAGTAGCCTGGAGCCTACCAGATGCCCTGGTGGTCCCCCATGCTCAGAACCCTAATGATGGA
CATCTGGCCAGACATGTTAATGAGAAGAAACCTGCCAGGAACAGTGGATCCAAGCCATCTACCCCTGAGA
GCTGGAATGAACAAAGCCCGTGGTCTCCAGAAGCAGTGTGGATGCCGGCTGATCATGAGGAGGACCCAGT
AGCAGGGTCTGGCTCTTTACAAGAAAGTCCCAACAATCGAGTTTCTGCAGTCCAGCCACAGCGGCCTGGT
CCCTGTAAAACCACCCCCTTGAGCAGCCAGAAGAAGAGAAGACAATACCCGCTCGGAGATGGGATAGTCA
CAAAGGAAGATCTGGACAGCACAACCCTAACCTCTAAGGAGGATTTGATCCCTAGAACAGACCAGCCAGA
GACATTCTGGAGAGCTCAGGGCCTGGAGGCTCTGGGCTCTGTGGCAAATGCTTTGTCCCTGTCTGACAGG
GTAGAGAGGAACCGCCTCCTGTTGCAGGAGATACTGAAGGTTTCCAGACAGAGTCCTCCCAAAGCAGGGA
GCCCAGACTGGACATCCTGGGACCGAGATGCATCAGAGCGACCAGCGGGAGACGTGGACTGGGACTCGGG
CACCCCCCAGCAGGACTCAGGTCAGAGCAGGACCTTTGTTCCCAAGCTGGAGCCTACACTGAGTGCCAGG
CATGAGGAAGCCAAGAATCTGCTTCGGCGTGCTCGCATGAAGGCCAAGACCCAACCGCTCCGAGCCAGCC
ATGATATCGTGCCCACCATTGCTCAGGGCTGCCGAAATGGCCAGAGAAGCCCAGCCCCGGAATTGAGGAC
CACCTCTGCCTACAGAGAGAACCTCCAGAATGGGAACTTGAATGACCCCTCCAGCATAGAGTCCAGCAAT
GGGCAGTGGCCCAAGCAAGAAATGCCCCTGTCTCATGTCCGTTTTGAAGATGAGTCTGCCCACGAGGCTG
AATTCCGGTACCTGGACCGGCTTCAGCAGCGCCAGCGTCAAGTGTTAAGCACAGTGCTCCATGCTGTGGA
CCAAGGACCTCTACGCTCCAAACCCGACCTAACCAACTACATTAACCGCATTGTAGGGAATAGCTCATTT
CATAGGGCCGTGGGCTGCCTGGACCAGAGTAACTTCCCTGTACCACCACCTCCTTGGGACAATGAGAGGA
AGTGTCCAGCCTGTGGCAGCTGTCTGGAGGAGCGTTGCCCTGCTGAGGAGAGGGCAGCCTCTGACCTGAG
AGTCCTCCGGAGTCTCCAGGCTGCCTGTGAGGCAGAGGCAGTACTGCTGGGGCCCTGTAATTCCCATGGT
CTGAGCTCCCCATTCCCAGGGCTCCACACAGAATGGATCCGGGAAACACACATCACAGACACTGTTGCCA
CACACCCTGAGGAAGAGGAGGACTCTGCCCTGGACAGCACCCACAGTTCAGACAGCTGGAAAGATGGTAC
TGATGCCAGGACCTCTCAGTCTAGCAGGGCAGGTGAGCAGATCCGAGTGAGCAGCCCCCAGCAGCGGTGG
CATGGGTCTAGGCCCCAGGGAGGTCCCAGGTGGTCCAGAAAGGCTGAGGCGGAGCTGCCCTGCGGCCTTC
AGGCCTGGTCTCACCTGCCCCAGCTTGATGATGGGGTTGTAGGAGGGGAGGGGAGAGAAGCCAGTGGACA
CATACCTCAGGGGACTCTGTTTCCAGAGGAAGATGCTGTGCCTAAACCTGCCTTGGAACCTAAGAGACCT
TGGTCCCAGGGGCAGCTTGGACCTCGGTCAGGAAGTCACTGTGCCCACCCCGAGGACTGCAGATCTCCAT
GCAGGACAGCTTATGCTGTGCCGTTTTCCAAGACACGTGGGTCCTCAGGATCAGGCCAACCACCAGACCA
AGTTCCTGAAAGCCATGAGTCTCTGAAAACTCTCTGCACTTCTCCCCTCCAACGGAGCCATGAAGAGCCC
TCTGCACCCCTCCCAGCCTCACAGTCAACATTGACCCTCCCCGAGGAAGTGCCAACCCCTCCTTCTTTGA
GGAAATCCCTCTGCCCTATGCCTCCGAGGAAGTCAGTCCAGAAGGGGCATCACTGGCAGGAACACCAGGC
AGAGCATATGGATAGCCCCCTGCCTGTGTCCCCTCCAAGAACTGTGGTTCTCACGCGACCCCAACCCCAA
CCCTGTAGCCCCCAAGTCAAGCATCCACTGCTGGACCTGTTCAACAACAACTCCAGCAGCAGCATCCCTC
TAGGGCTGCAGGGGCCCTCAGGAGTGGCTGTCCACAGGAATAGATCTGAAAAGGACCAGTGCTGTCAGGA
GCCTGTGCTGCCTCTGGAGAGCAATGGAGATGGAACACTCCAGGACTCTCTCCAGTCAGTGGATATCGCC
ACTGTCAACTCTACAGCCATCACCCTCGCCCTTACCTCAGAGGAGCCTGAGCGCAGCCAGGAGTGGGGAG
GAGGTTCACAGAGGACAGGATCCAGCTCTGGGGGCCATGTGCCCACTGGAGCATCACTTGAGGCCAGTGC
AGGGCACAGGTCACCCTCAAGCACCCATTCTGATGGGAACAAGAAAAGGAGGAGTAGCATTACCTCTGCC
CTGGGGCTCAAAAAGCTTTTCTCAGCCCTGGGCCACACACCCCAGCCCAGACTTGGCCCATCCCGAAGCT
ACAGTGTGGAACAACTGCAGCCCTCAGCCCTGGCTCCACAGACCAGCACCCCCAAAGTGAAAAGAGCCCC
ATCGTTACAGACCCTGCATCTGGTGTCATCCTCCCATCAGCATCGGAGAGCAACTTCCTTCCAGAACCTC
CATTCTCTGCTAGGTGGCAAGGGAGACCGGTCCAGCCTCTACCTGGTAGAGGGGTCAGGGGACAGCAGTG
GACCCAGCAGGCCAGCCAAGGCCTTTCCCCATCGTGCCCTCAGTGTGGAAGATGTGGGTGCCCCTAGCCT
GGCTCGTACTGTGGGCCGCGTGGTGGAGGTGTTCCCAGATGGCACGAGCCAGCTGCAGCTGCAGCGACCC
CCAAAGGGCACCTTTGGATTCCATGTAGCCCATGGCAGTGGCCGGCGAGACTCAGGGCTCTATGTGCAGG
CCATGGCTGACCTGGACACCGCGAAGCTGTACTCGGGGCTGCTCAGGGTCGGGGATGAGATTCTGGAGGT
GGGCGGGGCCAAGGTTGCTGGACTGGGCTTGGCTCACATCAAAGAGCTACTGGCTCATGCGGAGAGCTTG
TCCATTCGTGTCCTGAGACAAAGGCCGGTCCCCCAGTGA

Translation (1202 aa):
MEGMEAAAKPARRSQASRPGSTTSPTQVTPAMARDGAEQPDSGPLPRPSPCPQEDRASNLMPPKPPRTWG
LQLQGPSVLESKVKALKEKMTAGKQGTDPRPTSYERPSPTKSKCHQVKTGVAWSLPDALVVPHAQNPNDG
HLARHVNEKKPARNSGSKPSTPESWNEQSPWSPEAVWMPADHEEDPVAGSGSLQESPNNRVSAVQPQRPG
PCKTTPLSSQKKRRQYPLGDGIVTKEDLDSTTLTSKEDLIPRTDQPETFWRAQGLEALGSVANALSLSDR
VERNRLLLQEILKVSRQSPPKAGSPDWTSWDRDASERPAGDVDWDSGTPQQDSGQSRTFVPKLEPTLSAR
HEEAKNLLRRARMKAKTQPLRASHDIVPTIAQGCRNGQRSPAPELRTTSAYRENLQNGNLNDPSSIESSN
GQWPKQEMPLSHVRFEDESAHEAEFRYLDRLQQRQRQVLSTVLHAVDQGPLRSKPDLTNYINRIVGNSSF
HRAVGCLDQSNFPVPPPPWDNERKCPACGSCLEERCPAEERAASDLRVLRSLQAACEAEAVLLGPCNSHG
LSSPFPGLHTEWIRETHITDTVATHPEEEEDSALDSTHSSDSWKDGTDARTSQSSRAGEQIRVSSPQQRW
HGSRPQGGPRWSRKAEAELPCGLQAWSHLPQLDDGVVGGEGREASGHIPQGTLFPEEDAVPKPALEPKRP
WSQGQLGPRSGSHCAHPEDCRSPCRTAYAVPFSKTRGSSGSGQPPDQVPESHESLKTLCTSPLQRSHEEP
SAPLPASQSTLTLPEEVPTPPSLRKSLCPMPPRKSVQKGHHWQEHQAEHMDSPLPVSPPRTVVLTRPQPQ
PCSPQVKHPLLDLFNNNSSSSIPLGLQGPSGVAVHRNRSEKDQCCQEPVLPLESNGDGTLQDSLQSVDIA
TVNSTAITLALTSEEPERSQEWGGGSQRTGSSSGGHVPTGASLEASAGHRSPSSTHSDGNKKRRSSITSA
LGLKKLFSALGHTPQPRLGPSRSYSVEQLQPSALAPQTSTPKVKRAPSLQTLHLVSSSHQHRRATSFQNL
HSLLGGKGDRSSLYLVEGSGDSSGPSRPAKAFPHRALSVEDVGAPSLARTVGRVVEVFPDGTSQLQLQRP
PKGTFGFHVAHGSGRRDSGLYVQAMADLDTAKLYSGLLRVGDEILEVGGAKVAGLGLAHIKELLAHAESL
SIRVLRQRPVPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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