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Report for CCDS28361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28361.1 Public Mus musculus 16 C2cd2 23 108 98 CCDS HistoryNCBI Gene:207781Re-query CCDS DB by CCDS ID:28361.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170757.2 ENSMUSP00000127368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170757.2Link to Ensembl Protein Viewer:ENSMUSP00000127368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170757Re-query CCDS DB by Protein ID:ENSMUSP00000127368
Original member Current member NCBI NM_174847.2 NP_777272.2 Accepted alive Link to Nucleotide Sequence:NM_174847.2Link to Protein Sequence:NP_777272.2Re-query CCDS DB by Nucleotide ID:NM_174847Re-query CCDS DB by Protein ID:NP_777272Link to BLAST:NP_777272.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777272.2 696 E9Q3C1 696 100% 0 0

Chromosomal Locations for CCDS 28361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97859356 97859576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97868592 97868916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97870153 97870280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97875129 97875242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97876220 97876394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97877108 97877232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97879610 97879674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97881589 97881694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97883273 97883396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97886088 97886210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97890014 97890118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97892190 97892309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97912606 97912704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97922055 97922315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGGCTCGTGGCTCAGCGAGGTGCAGTGGCTCTTCCTGGTGTCGCTCTTCGTCGCGGCCCTGGGCACCG
TGGGCCTGTACTTGGCGCAGTGGGCGCTGGCCAAGGCGCGACCCCCGCCCCGGCGGCGGGCGGAGCCGGA
TGAGCTAAGGCGCCGGGAGTCGGACACACTCCTTTCCTGGATACTGACACGGGATAGCTGGGGGAACCAG
TGGCAGGCGGCTTGGGTGACCGCCCTGAACTATGAGGCCGAAAAGAGAGGGGGTCCACTGCGTCTCTCTT
TCCAGAAGGACCCACGGCCACAATCCTTGCAGCTGACAGTTGAGAAGGTATCCAGTGTAGTCAAGTCAAC
CCAGGAGAAGGTGGTGATCTGTCATGTGGTGGGTGAGACCCTTCAGTTCTTGGTCAGTGCAGGGCCTGCC
TCTGCCACAGGCTCGGAGTGCCAGCTGTATGATGTCCATCTTTCCCCATTTCATTTAAAGGTAGAATTCC
ACATGGAAGAGAAGAGAGAGGACATACAAATCAGGTGGTCTTTCACCCACGTCCCAGAAACAGCCATCAA
GATCCAGCCCCAGGCCCCAGGGGAGAAGCAGGCGCTCGGGGTAAACATGCTTTCTGAAGCCCTTGAGGAT
CTTTTCAAGCACCTAGTTAATGCTGCCTCTCCATCTGTTTTTCTGAGCACCAAACCCACGCAGGTCAAAG
AAGCTCAGAGTCTACAGTGCCCTTCCTCCACTGCTCAGGAACCCTGCCCTCCCAAACCTCCAAGGGCTCA
TGAACTAAAATTGCAGGTGAAGAATATCAGAGTTTCCCTGATAAACCACCCTGGTGCTTCAGGCCTTAGC
CATGTGTGCGTGGCTCAGCTGAACGATCCTGAACAGAGATTCATCAGCACCCTAGTGAGAAACACTACTG
ACCTCAGTTGGGAGGAGGAATTCACCTTTGAACTGAACGCCAAATCCAAGGAGCTGGTCCTGCAGATCTC
ACAGGATGGGTGCTCCTCAGAAGGTCTGTTGGGGATAGCAACCATTCACCTGGACCTATTTAGGAAGCAG
CCTAATGGCCCACAGACCTTCAGACTGATCAGTGGGACAGAGCCTGACAGCTTGGTGTTGGGCTCAGTCA
CTGCAGAGTTTTCTTACGTAGAACCTGGGGAGCTGAAATCCTGGCCAGCTCCTCCCCCTGTTTCTGCTGC
AAAGATAGAAAAGGACCGTACGGTGATGCCATGTGGGACTGTGGTCACCACTGTCACTGCTGTGAAGACC
AAACCTCGGTTTGACACTGGGAGGGCAACCCCACTGAACTCAGAGTCCCCTGTGAGGACACCCGTCACAG
TGAAGGTCATTGAGAAGGACATCTCTGTCCAGGCCATTTCTTGCCACAGCGCCCCCGTCAGCAAGACATT
CTCCTCTTCAGACACGGAACTGTTGGTGCTGAATGGCTCAGACCCTGTGGCTGAAGTCGCCATTCGGCAA
CTCAGCGAGTCCTCAAAGCTGAAACTCAAGTCCCCACGGAAGAAAAGCACCATCATAATTTCAGGGATCT
CCAAGACCTCACTATCTCAGGACCACAATGCTGCCCTCATGCTGGACTACGCAGCTTCTATGGACAGCAC
CAACCAGGGAGATGCCACGTCTGCTTTGTGCCATCCAGAGGCCACTGAAGCCTCTGCTACTACCCCACCT
GAAGAAAATGAGCCAGCCCAGACCCTACCTGCCCTCAAGCCTAGAGAAAATGATCTAGATTCCTGGGAAC
TGGAGAAGGAGTCTCCAGTAGCATCATGGAGCGGACCAGCCTTGCAGGAGCCTGACGGTGATGAACTATC
CGAGAGCTCCCTGAGTACTTCAGAGCTAGGAGCTATGAAGAAGCATAAAGGAGGACTCCTAAGGAAAGGT
GCCAAGCTCTTCTTCCGCCGGCGACACCAACAGAAAGACCCGGGCTTGAGCCAGTCACATAATGACCTGG
TATTCCTGCAGCAGCCAGAGGGGAGGCAGAAGAAGGGGGCGACCCTCGGCCGGCTCCTGAACAGAAAGCT
GCTTACCAGGCACAGAGGCAAACACACTATGAATGGAGTACCCAGAGAGCCCTGCATATAG

Translation (696 aa):
MGSWLSEVQWLFLVSLFVAALGTVGLYLAQWALAKARPPPRRRAEPDELRRRESDTLLSWILTRDSWGNQ
WQAAWVTALNYEAEKRGGPLRLSFQKDPRPQSLQLTVEKVSSVVKSTQEKVVICHVVGETLQFLVSAGPA
SATGSECQLYDVHLSPFHLKVEFHMEEKREDIQIRWSFTHVPETAIKIQPQAPGEKQALGVNMLSEALED
LFKHLVNAASPSVFLSTKPTQVKEAQSLQCPSSTAQEPCPPKPPRAHELKLQVKNIRVSLINHPGASGLS
HVCVAQLNDPEQRFISTLVRNTTDLSWEEEFTFELNAKSKELVLQISQDGCSSEGLLGIATIHLDLFRKQ
PNGPQTFRLISGTEPDSLVLGSVTAEFSYVEPGELKSWPAPPPVSAAKIEKDRTVMPCGTVVTTVTAVKT
KPRFDTGRATPLNSESPVRTPVTVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVAEVAIRQ
LSESSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDATSALCHPEATEASATTPP
EENEPAQTLPALKPRENDLDSWELEKESPVASWSGPALQEPDGDELSESSLSTSELGAMKKHKGGLLRKG
AKLFFRRRHQQKDPGLSQSHNDLVFLQQPEGRQKKGATLGRLLNRKLLTRHRGKHTMNGVPREPCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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