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Report for CCDS36023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36023.1 Public Mus musculus 10 Spic 23 108 98 CCDS HistoryNCBI Gene:20728Re-query CCDS DB by CCDS ID:36023.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004473.14 ENSMUSP00000004473.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004473.14Link to Ensembl Protein Viewer:ENSMUSP00000004473.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004473Re-query CCDS DB by Protein ID:ENSMUSP00000004473
Original member Current member NCBI NM_011461.3 NP_035591.3 Accepted alive Link to Nucleotide Sequence:NM_011461.3Link to Protein Sequence:NP_035591.3Re-query CCDS DB by Nucleotide ID:NM_011461Re-query CCDS DB by Protein ID:NP_035591Link to BLAST:NP_035591.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035591.3 242 Q6P3D7-1 242 100% 0 0

Chromosomal Locations for CCDS 36023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88675664 88676070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88677500 88677608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88678524 88678636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88679859 88679955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88680479 88680481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGACTTGTTGTATTGATCAAGACAGTTTGGGGCAAACATTTCAAGACGCCATTGACATATTGATCCAAC
AATCAGCTGGAGAAAGTCAATACTCCTCAGAAAATAGAAATTACATGGCTATCATTAACCCTTATCCTCA
CGTCAGAGGCAACGCTAACTACTATGGAATGTCACCCACAGAGAACCCCCTCTATGACTGGAGAGGTGTA
ACAAATGGTTCTGCAGACCTGTATTTGGAAGGAGGCTTCCACCAATCCGTACAGAACATAGCTGAAAGCC
AGCTGGTACAACCCCCCTTCTTCCAGCAAAAGGGAGGAAGAGGCAGGAGAAAGCTTCGGCTGTTTGAATA
CCTTTTCGAATCCCTGTGCAATTCAGAGATGGTGTCTTGTATTCAGTGGGTTGACAAAGCCAGAGGCATC
TTTCAGTTTATATCAAAAAACAAAGAAACACTCGCTGAACTCTGGGGGCAGAGAAAAGGCAACCGGAAAC
CCATGACTTACCAGAAGATGGCCAGAGCCCTGAGGAATTATGCCAGAACTGGGGAGATCATAAAAATCCG
GAGAAAGCTGACCTACCAGTTCAGCGAGGCTGTTCTCCAAAGACTTGCTCCAGCTAACTACCTGGGAAAA
GACCTCTTCTACCCTCAGTATGGCCAACCTGATCAGGGCTACCTCAGTTTAAACCACTGGAATGCAAATC
ACTATGCTCACGGCAGTTACCAGAGCTGA

Translation (242 aa):
MTCCIDQDSLGQTFQDAIDILIQQSAGESQYSSENRNYMAIINPYPHVRGNANYYGMSPTENPLYDWRGV
TNGSADLYLEGGFHQSVQNIAESQLVQPPFFQQKGGRGRRKLRLFEYLFESLCNSEMVSCIQWVDKARGI
FQFISKNKETLAELWGQRKGNRKPMTYQKMARALRNYARTGEIIKIRRKLTYQFSEAVLQRLAPANYLGK
DLFYPQYGQPDQGYLSLNHWNANHYAHGSYQS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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