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Report for CCDS23561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23561.1 Public Mus musculus 9 Smarcc1 23 108 98 CCDS HistoryNCBI Gene:20588Re-query CCDS DB by CCDS ID:23561.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088716.11 ENSMUSP00000086094.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088716.11Link to Ensembl Protein Viewer:ENSMUSP00000086094.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088716Re-query CCDS DB by Protein ID:ENSMUSP00000086094
Original member NCBI NM_009211.2 NP_033237.2 Updated not alive Link to Nucleotide Sequence:NM_009211.2Link to Protein Sequence:NP_033237.2Re-query CCDS DB by Nucleotide ID:NM_009211Re-query CCDS DB by Protein ID:NP_033237
Current member NCBI NM_009211.3 NP_033237.2 Accepted alive Link to Nucleotide Sequence:NM_009211.3Link to Protein Sequence:NP_033237.2Re-query CCDS DB by Nucleotide ID:NM_009211Re-query CCDS DB by Protein ID:NP_033237Link to BLAST:NP_033237.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033237.2 1104 P97496-1 1104 100% 0 0

Chromosomal Locations for CCDS 23561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110132117 110132308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110135569 110135688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110139549 110139634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110147045 110147126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110149931 110150023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110153773 110153842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110157276 110157345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110164802 110164877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110167605 110167730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110170946 110171067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110173881 110174005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110175042 110175101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110177468 110177505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110182922 110183043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110183817 110183888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110185823 110185936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110186758 110186911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110187880 110187993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110190903 110190962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110196153 110196411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110197629 110197790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110202503 110202558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110204212 110204326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110205999 110206153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110213509 110213643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110221892 110222156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110234877 110235053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110237819 110237913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3315 nt):
ATGGCCGCGACAGCGGGTGGCGGTCCGGGAGCAGCAGCAGGCGCCGTGGGTGCAGGGGGTGCGGCGGCGG
CCTCCGGGCTGGCCGTGTACCGGAGGAAGGACGGGGGCCCGGCCAGCAAGTTTTGGGAGAGCCCGGACAC
GGTGTCCCAGCTAGATTCGGTGCGAGTCTGGCTGGGCAAGCACTACAAGAAGTATGTTCATGCAGATGCT
CCTACCAATAAAACACTAGCTGGACTGGTGGTGCAGCTTCTACAGTTCCAAGAAGATGCCTTTGGGAAGC
ATGTCACCAACCCAGCTTTCACCAAACTACCTGCAAAATGTTTCATGGATTTCAAAGCTGGAGGCACCTT
GTGTCACATTCTTGGGGCAGCTTACAAGTACAAAAATGAACAGGGCTGGCGGAGATTTGATCTTCAGAAC
CCATCCCGAATGGATCGTAACGTTGAAATGTTCATGAACATTGAGAAAACATTGGTACAGAACAACTGTC
TGACTAGACCAAACATCTACCTCATTCCAGACATTGATTTGAAGTTGGCTAACAAGTTGAAAGATATCAT
CAAACGGCATCAGGGGACATTTACTGATGAGAAGTCAAAAGCTTCCCACCATATTTATCCATATCCTTCC
TCACAAGAGGATGAGGAGTGGCTGAGACCAGTGATGAGGAGAGACAAGCAGGTGCTGGTGCACTGGGGTT
TCTACCCAGACAGCTATGACACTTGGGTCCACAGTAATGATGTTGATGCTGAAATTGAAGATGCACCAAT
CCCAGAAAAGCCCTGGAAGGTTCATGTAAAATGGATTTTGGACACTGACGTTTTCAATGAATGGATGAAT
GAAGAGGATTATGAAGTGGATGAGAACAGAAAGCCAGTGAGCTTTCGTCAACGAATTTCAACAAAGAATG
AAGAGCCAGTCAGAAGTCCAGAAAGGAGAGACAGAAAAGCCTCTGCCAACTCTAGGAAGAGGAAACCTTC
CCCTTCTCCTCCTCCTCCCACAGCCACAGAGTCCCGCAAGAAGAGCGGGAAGAAAGGACAAGCTAGCCTT
TATGGGAAACGTAGAAGTCAGAAGGAAGAAGATGAGCAAGAAGATCTTACCAAGGACATGGAAGACCCCA
CACCTGTACCTAACATAGAGGAAGTGGTTCTCCCTAAGAATGTAAACCCAAAGAAGGACAGTGAAAACAC
ACCCGTTAAAGGAGGCACGGTGGCAGATCTAGATGAGCAGGATGAAGAAGCAGTTACAACAGGAGGAAAG
GAAGATGAAGATCCCAGCAAAGGTGATCCAAGTCGCTCAGTTGACCCAGGTGAAGACAACGTGACAGAAC
AGACCAATCACATCATTATTCCCAGCTACGCATCCTGGTTTGATTATAATTGTATTCATGTCATTGAACG
GCGTGCGCTTCCTGAGTTCTTTAATGGAAAAAACAAATCCAAGACCCCTGAAATATACTTGGCATATCGA
AATTTTATGATTGACACATACCGTCTAAACCCTCAAGAATATTTAACCAGCACTGCTTGCCGGCGAAACC
TGACTGGAGATGTGTGTGCTGTGATGAGGGTTCATGCCTTCTTAGAGCAGTGGGGTCTTGTTAACTACCA
AGTTGACCCAGAGAGTCGACCCATGGCAATGGGACCTCCTCCCACTCCTCACTTCAATGTGTTAGCTGAC
ACACCCTCTGGGCTTGTGCCCCTGCATCTTCGATCACCTCAGGTCCCTGCCGCTCAACAGATGTTAAATT
TTCCTGAGAAGAACAAGGAAAAACCAATTGATTTGCAGAACTTTGGTCTTCGAACTGACATTTACTCCAA
GAAAACACTGGCAAAGAGTAAAGGTGCTAGTGCTGGAAGGGAGTGGACAGAACAGGAGACCCTTCTTCTC
CTAGAGGCTCTGGAGATGTACAAGGACGATTGGAATAAAGTGTCAGAACATGTTGGAAGCCGTACTCAGG
ACGAATGCATCCTCCACTTTCTGAGGCTTCCCATTGAGGACCCTTACCTTGAAAATTCAGATGCTTCTCT
TGGGCCACTGGCTTACCAGCCTGTCCCTTTCAGCCAGTCGGGAAACCCGGTGATGAGCACTGTTGCCTTT
TTAGCATCTGTCGTTGACCCCCGTGTAGCATCTGCTGCAGCAAAAGCAGCGTTGGAGGAGTTTTCTCGTG
TCCGAGAAGAAGTACCCCTGGAATTGGTTGAAGCACATGTCAAGAAAGTACAGGAAGCTGCAAGAGCCTC
TGGGAAGGTGGACCCCACCTATGGCTTGGAGAGCAGCTGTATTGCTGGCACAGGGCCTGACGAGCCAGAG
AAGCTTGAAGGATCTGAAGAAGAGAAGATGGAAACAGATCCTGATGGTCAGCAGCCTGAAAAGGCAGAAA
ACAAAGTGGAAAATGAATCGGATGAAGGTGATAAAATACAAGATCGAGAGAATGAAAAAAACACTGAGAA
GGAACAAGATAGTGACGTCAGTGAGGATGTCAAGCCAGAAGAAAAGGAGAATGAAGAGAACAAAGAGCTC
ACTGATACATGTAAAGAAAGAGAAAGCGATGCCGGGAAGAAGAAAGTGGAACACGAGATTTCGGAAGGAA
ACGTTGCCACAGCCGCAGCAGCTGCTCTGGCCTCAGCTGCTACTAAAGCCAAGCACCTGGCGGCTGTTGA
AGAAAGAAAAATCAAGTCCTTGGTAGCTCTCTTGGTTGAAACACAAATGAAGAAACTAGAGATCAAACTT
CGACATTTTGAAGAGCTGGAGACTATAATGGACAGAGAGAAAGAGGCTCTAGAACAACAGAGACAGCAGT
TGCTTACTGAGCGTCAGAACTTCCACATGGAACAGTTGAAATATGCTGAACTACGTGCCCGGCAGCAAAT
GGAGCAGCAGCAGCAGCATGGCCAGACACCTCAGCAGGCGCACCAGCACACGGGAGGGCCGGGGATGGCC
CCACTTGGAGCCACAGGCCACCCTGGCATGATGCCGCATCAGCAGCCCCCTCCCTACCCACTGATGCACC
ATCAGATGCCGCCACCCCATCCTCCCCAACCAGGTCAAATACCAGGCCCTGGCTCCATGATGCCTGGCCA
GCCCATGCCAGGTCGCATGATCCCCGCTGTGGCAGCCAACATTCACCCTACTGGGAGTGGCCCTACCCCT
CCTGGTATGCCTCCAATGCCCGGAAACATCTTAGGACCCCGGGTACCCCTCACAGCACCAAACGGCATGT
ATCCTCCTCCACCACAGCAGCAGCAGCCGCCTCCTCCTGCAGATGGGGTCCCTCCACCTCCTGCTCCAGG
CCCACCCGCCTCGGCCACTCCCTAG

Translation (1104 aa):
MAATAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGKHYKKYVHADA
PTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKYKNEQGWRRFDLQN
PSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYPS
SQEDEEWLRPVMRRDKQVLVHWGFYPDSYDTWVHSNDVDAEIEDAPIPEKPWKVHVKWILDTDVFNEWMN
EEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANSRKRKPSPSPPPPTATESRKKSGKKGQASL
YGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYR
NFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLAD
TPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLL
LEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAF
LASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPE
KLEGSEEEKMETDPDGQQPEKAENKVENESDEGDKIQDRENEKNTEKEQDSDVSEDVKPEEKENEENKEL
TDTCKERESDAGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQQQHGQTPQQAHQHTGGPGMA
PLGATGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPGSMMPGQPMPGRMIPAVAANIHPTGSGPTP
PGMPPMPGNILGPRVPLTAPNGMYPPPPQQQQPPPPADGVPPPPAPGPPASATP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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