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Report for CCDS22730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22730.1 Public Mus musculus 8 Slc7a5 23 108 98 CCDS HistoryNCBI Gene:20539Re-query CCDS DB by CCDS ID:22730.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045557.9 ENSMUSP00000041557.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045557.9Link to Ensembl Protein Viewer:ENSMUSP00000041557.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045557Re-query CCDS DB by Protein ID:ENSMUSP00000041557
Original member Current member NCBI NM_011404.3 NP_035534.2 Accepted alive Link to Nucleotide Sequence:NM_011404.3Link to Protein Sequence:NP_035534.2Re-query CCDS DB by Nucleotide ID:NM_011404Re-query CCDS DB by Protein ID:NP_035534Link to BLAST:NP_035534.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035534.2 512 Q9Z127 512 100% 0 0

Chromosomal Locations for CCDS 22730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121883040 121883095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121883591 121883768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121884983 121885132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121885909 121886005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121886280 121886383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121886858 121886981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121887497 121887541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121888322 121888427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121896428 121896565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121907066 121907606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGCGGTCGCGGGCGCCAAGAGGCGCGCGGTTGCGACCCCGGCGGCGGCGGCGGCGGAGGAGGAGCGGC
AGGCGCGGGAGAAGATGTTGGAGGCGCGGCGCGGGGACGGCGCGGACCCCGAGGGCGAAGGCGTGACCCT
GCAGCGCAATATCACGCTGCTCAACGGTGTGGCCATCATCGTGGGCACCATCATCGGCTCTGGCATCTTC
GTGACGCCCACCGGCGTGCTCAAGGAAGCGGGGTCGCCCGGACTGTCGCTCGTGGTGTGGGCTGTGTGCG
GCGTCTTCTCCATCGTGGGCGCACTCTGCTACGCGGAGCTGGGCACCACCATCTCCAAGTCAGGCGGCGA
CTACGCCTACATGCTGGAGGTCTACGGCTCGTTGCCCGCCTTCCTCAAGCTCTGGATCGAGCTGCTCATC
ATTCGGCCCTCCTCGCAGTACATCGTGGCGCTGGTCTTCGCCACCTACTTGCTCAAGCCGGTCTTCCCCA
CTTGTCCGGTGCCCGAGGAAGCTGCCAAGCTCGTGGCCTGCCTCTGCGTGCTGCTCCTCACAGCTGTGAA
CTGCTACAGCGTAAAGGCTGCGACCCGTGTGCAGGACGCCTTTGCGGCTGCCAAGCTGCTGGCCCTGGCC
CTCATCATTTTGCTCGGCTTCATCCAGATGGGGAAGGACATGGGACAAGGTGATGCGTCCAACCTGCAGC
AGAAGTTGTCCTTTGAAGGCACCAATCTGGACGTGGGGAACATTGTGTTGGCTTTGTACAGCGGCCTCTT
CGCCTACGGAGGATGGAACTATCTGAATTTTGTCACGGAGGAGATGATCAACCCCTACAGGAACCTGCCC
CTGGCCATCATCATCTCCTTGCCCATTGTCACACTGGTCTATGTGCTGACGAACCTGGCCTATTTCACTA
CCCTCTCTACCAACCAGATGCTGACATCTGAAGCTGTGGCTGTGGACTTCGGGAACTACCACTTGGGTGT
CATGTCCTGGATCATTCCTGTCTTTGTGGGCTTGTCTTGCTTCGGCTCTGTCAATGGGTCTCTGTTCACG
TCCTCAAGACTGTTCTTCGTGGGATCCAGGGAGGGCCACCTGCCTTCTGTCCTCTCCATGATCCACCCAC
AGCTGCTGACACCTGTGCCATCACTGGTGTTCACGTGTATCATGACGCTGATGTACGCCTTCTCCAGAGA
TATCTTCTCCATCATCAACTTCTTCAGCTTCTTCAACTGGCTGTGTGTGGCCCTGGCCATCATCGGTATG
ATGTGGCTCCGATTCAAGAAGCCTGAGCTGGAGCGTCCCATCAAGGTGAATCTGGCCCTCCCGGTGTTCT
TTATCCTGGCCTGCCTCTTCCTCATTGCCGTGTCATTCTGGAAGACACCCATGGAGTGTGGCATTGGCTT
CGCCATCATCCTCAGCGGGCTGCCTGTCTACTTCTTTGGTGTCTGGTGGAAGAACAAGCCCAAGTGGATT
CTGCAGGCTATCTTCTCTGTGACGGTGCTCTGCCAGAAGTTGATGCAGGTGGTACCTCAGGAGACTTAG

Translation (512 aa):
MAVAGAKRRAVATPAAAAAEEERQAREKMLEARRGDGADPEGEGVTLQRNITLLNGVAIIVGTIIGSGIF
VTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCYAELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLI
IRPSSQYIVALVFATYLLKPVFPTCPVPEEAAKLVACLCVLLLTAVNCYSVKAATRVQDAFAAAKLLALA
LIILLGFIQMGKDMGQGDASNLQQKLSFEGTNLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLP
LAIIISLPIVTLVYVLTNLAYFTTLSTNQMLTSEAVAVDFGNYHLGVMSWIIPVFVGLSCFGSVNGSLFT
SSRLFFVGSREGHLPSVLSMIHPQLLTPVPSLVFTCIMTLMYAFSRDIFSIINFFSFFNWLCVALAIIGM
MWLRFKKPELERPIKVNLALPVFFILACLFLIAVSFWKTPMECGIGFAIILSGLPVYFFGVWWKNKPKWI
LQAIFSVTVLCQKLMQVVPQET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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