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Report for CCDS27666.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27666.1 Public Mus musculus 15 Slc25a17 23 108 98 CCDS HistoryNCBI Gene:20524Re-query CCDS DB by CCDS ID:27666.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27666.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023040.8 ENSMUSP00000023040.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023040.8Link to Ensembl Protein Viewer:ENSMUSP00000023040.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023040Re-query CCDS DB by Protein ID:ENSMUSP00000023040
Original member Current member NCBI NM_011399.3 NP_035529.1 Accepted alive Link to Nucleotide Sequence:NM_011399.3Link to Protein Sequence:NP_035529.1Re-query CCDS DB by Nucleotide ID:NM_011399Re-query CCDS DB by Protein ID:NP_035529Link to BLAST:NP_035529.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035529.1 307 O70579 307 100% 0 0

Chromosomal Locations for CCDS 27666.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81319629 81319776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81323610 81323692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81327041 81327136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81327217 81327362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81329050 81329166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81337936 81338087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81339974 81340040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81344101 81344161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81360677 81360730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCCTCTGTGCTGTCCTACGAAAGTCTGGTACACGCCGTGGCCGGAGCCGTGGGAAGTGTGACTGCCA
TGACAGTGTTCTTCCCCTTGGATACTGCTAGACTTCGGCTTCAGGTCGATGAGAAAAGAAAGTCAAAAAC
GACGCATGCAGTGCTCCTGGAGATAATTAAGGAAGAAGGCCTCCTGGCACCATACCGAGGATGGTTTCCA
GTTATTTCCAGTCTCTGCTGCTCCAATTTTGTCTATTTTTACACTTTTAATAGCCTCAAAGCAGTGTGGG
TCAAAGGTCAGCGTTCTTCTACAGGAAAAGATCTCGTGGTTGGGTTTGTAGCAGGAGTGGTGAATGTGCT
GCTGACGACTCCGCTCTGGGTGGTAAACACCAGACTGAAGCTGCAGGGGGCAAAATTTCGGAATGAAGAC
ATTATACCAACTAACTACAAAGGCATTATCGATGCATTCCACCAGATTATTCGAGATGAAGGGATCTTGG
CTCTGTGGAATGGCACCTTCCCCTCCTTGCTGTTGGTCTTCAACCCTGCCATCCAATTCATGTTCTATGA
AGGCTTAAAACGGCAGCTTCTAAAGAAACGGATGAAGCTCTCTTCTCTGGATGTGTTCATCATTGGCGCA
ATAGCCAAAGCGATTGCCACCACAGTCACCTATCCCATGCAGACGGTACAGTCAATTCTGAGGTTTGGAC
GTCATAGACTGAACCCAGAAAACAGGACCCTGGGAAGTCTTCGGAATGTTCTCTCTCTTCTTCACCAGCG
AGTCAAGCGCTTTGGAATAATGGGACTCTACAAAGGCCTGGAAGCTAAGCTGCTGCAGACAGTGCTCACA
GCCGCCCTCATGTTCCTTGTGTACGAGAAACTGACAGCTGCTACCTTCACCGTAATGGGCTTGAAGAGCA
CACATAAGCACTGA

Translation (307 aa):
MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHAVLLEIIKEEGLLAPYRGWFP
VISSLCCSNFVYFYTFNSLKAVWVKGQRSSTGKDLVVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNED
IIPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFIIGA
IAKAIATTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLSLLHQRVKRFGIMGLYKGLEAKLLQTVLT
AALMFLVYEKLTAATFTVMGLKSTHKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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