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Report for CCDS22956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22956.1 Public Mus musculus 9 St3gal4 23 108 98 CCDS HistoryNCBI Gene:20443Re-query CCDS DB by CCDS ID:22956.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034537.7 ENSMUSP00000034537.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034537.7Link to Ensembl Protein Viewer:ENSMUSP00000034537.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034537Re-query CCDS DB by Protein ID:ENSMUSP00000034537
Original member Current member NCBI NM_009178.4 NP_033204.2 Accepted alive Link to Nucleotide Sequence:NM_009178.4Link to Protein Sequence:NP_033204.2Re-query CCDS DB by Nucleotide ID:NM_009178Re-query CCDS DB by Protein ID:NP_033204Link to BLAST:NP_033204.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033204.2 333 Q91Y74 333 100% 0 0

Chromosomal Locations for CCDS 22956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35047433 35047519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35047819 35047962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35052240 35052383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35053078 35053267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35053372 35053467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35054063 35054123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35054435 35054532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35054702 35054782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35055198 35055282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35055574 35055589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGACCAGCAAATCTCACTGGAAGCTCCTGGCCCTGGCTCTGGTCCTTGTTGTTGTCATGGTGTGGTATT
CCATCTCCCGAGAAGATAGGTACATTGAGTTCTTTTATTTTCCCATCTCAGAGAAGAAAGAGCCATGCTT
CCAGGGTGAGGCAGAGAGACAGGCCTCTAAGATTTTTGGCAACCGTTCTAGGGAACAGCCCATCTTTCTG
CAGCTTAAGGATTATTTTTGGGTAAAGACGCCATCCACCTATGAGCTGCCCTTTGGGACTAAAGGAAGTG
AAGACCTTCTTCTCCGGGTGCTGGCCATCACTAGCTATTCTATACCTGAGAGCATAAAGAGCCTCGAGTG
TCGTCGCTGTGTTGTGGTGGGAAATGGGCACCGGTTGCGGAACAGCTCGCTGGGCGGTGTCATCAACAAG
TACGACGTGGTCATCAGATTGAACAATGCTCCTGTGGCTGGCTACGAGGGAGATGTGGGCTCCAAGACCA
CCATACGTCTCTTCTATCCTGAGTCGGCCCACTTTGACCCTAAAATAGAAAACAACCCAGACACGCTCTT
GGTCCTGGTAGCTTTCAAGGCGATGGACTTCCACTGGATTGAGACCATCTTGAGTGATAAGAAGCGGGTG
CGAAAAGGCTTCTGGAAACAGCCTCCCCTCATCTGGGATGTCAACCCCAAACAGGTCCGGATTCTAAACC
CCTTCTTTATGGAGATTGCAGCAGACAAGCTCCTGAGCCTGCCCATACAACAGCCTCGAAAGATCAAGCA
GAAGCCAACCACGGGTCTGCTAGCCATCACCTTGGCTCTACACCTCTGCGACTTAGTGCACATTGCTGGC
TTTGGCTATCCAGATGCCTCCAACAAGAAGCAGACCATCCACTACTATGAACAGATCACACTTAAGTCTA
TGGCGGGATCAGGCCATAATGTCTCCCAAGAGGCTATCGCCATCAAGCGGATGCTAGAGATGGGAGCTGT
CAAGAACCTCACATACTTCTGA

Translation (333 aa):
MTSKSHWKLLALALVLVVVMVWYSISREDRYIEFFYFPISEKKEPCFQGEAERQASKIFGNRSREQPIFL
QLKDYFWVKTPSTYELPFGTKGSEDLLLRVLAITSYSIPESIKSLECRRCVVVGNGHRLRNSSLGGVINK
YDVVIRLNNAPVAGYEGDVGSKTTIRLFYPESAHFDPKIENNPDTLLVLVAFKAMDFHWIETILSDKKRV
RKGFWKQPPLIWDVNPKQVRILNPFFMEIAADKLLSLPIQQPRKIKQKPTTGLLAITLALHLCDLVHIAG
FGYPDASNKKQTIHYYEQITLKSMAGSGHNVSQEAIAIKRMLEMGAVKNLTYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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