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Report for CCDS24799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24799.1 Public Mus musculus 11 Shmt1 23 108 98 CCDS HistoryNCBI Gene:20425Re-query CCDS DB by CCDS ID:24799.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018744.14 ENSMUSP00000018744.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018744.14Link to Ensembl Protein Viewer:ENSMUSP00000018744.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000018744Re-query CCDS DB by Protein ID:ENSMUSP00000018744
Original member NCBI NM_009171.2 NP_033197.2 Updated not alive Link to Nucleotide Sequence:NM_009171.2Link to Protein Sequence:NP_033197.2Re-query CCDS DB by Nucleotide ID:NM_009171Re-query CCDS DB by Protein ID:NP_033197
Current member NCBI NM_009171.3 NP_033197.2 Accepted alive Link to Nucleotide Sequence:NM_009171.3Link to Protein Sequence:NP_033197.2Re-query CCDS DB by Nucleotide ID:NM_009171Re-query CCDS DB by Protein ID:NP_033197Link to BLAST:NP_033197.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033197.2 478 P50431 478 100% 0 0

Chromosomal Locations for CCDS 24799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60789144 60789316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60789596 60789706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60790146 60790262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60792949 60793071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60794836 60794952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60797525 60797737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60798594 60798675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60801428 60801588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60801916 60802031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60804263 60804408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60806946 60807023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCAGACAGGGATGCCACCCTGTGGGCTTCTCATGAGAAGATGTTGTCGCAGCCCCTCAAGGACAGTG
ATGCCGAGGTTTACAGCATCATTAAAAAGGAGAGCAACCGGCAGAGGGTCGGATTAGAGCTGATTGCCTC
GGAGAATTTTGCCAGCCGAGCTGTGTTGGAGGCCCTGGGATCTTGCTTAAATAACAAATACTCTGAGGGA
TATCCAGGCCAAAGGTATTATGGCGGGACCGAGTTCATCGATGAGCTGGAGATGCTGTGTCAGAAGCGTG
CATTACAGGCCTACCATCTGGATCCTCAGTGCTGGGGTGTCAATGTCCAGCCTTATTCAGGCTCCCCTGC
AAACTTTGCTGTGTATACTGCCCTGGTAGAGCCTCATGGGCGAATCATGGGCTTGGACCTGCCAGACGGT
GGCCATCTGACCCATGGCTTCATGACAGACAAGAAGAAAATCTCTGCCACATCTATCTTCTTTGAATCCA
TGCCTTATAAGGTGTACCCAGAGACTGGGTACATCAACTATGACCAGCTGGAGGAGAATGCCAGCCTCTT
CCACCCGAAGCTGATCATCGCAGGGACCAGCTGCTACTCCCGGAACCTGGACTACGCACGGCTGCGGAAG
ATTGCGGATGATAATGGGGCGTATCTCATGGCAGACATGGCACATATCAGTGGGCTCGTGGCAGCTGGGG
TGGTGCCCTCCCCCTTTGAACACTGCCATGTAGTGACCACTACAACCCACAAGACCCTGAGAGGCTGCCG
TGCTGGTATGATATTCTACAGAAAGGGTGTGCGCAGTGTGGATCCCAAGACTGGCAAAGAGACTTACTAT
GAACTGGAGTCCCTCATCAACTCTGCCGTGTTCCCAGGCCTTCAGGGGGGTCCTCACAACCATGCCATTG
CTGGTGTTGCTGTGGCCCTGAAGCAAGCCATGACTACAGAATTCAAAATCTACCAGCTCCAGGTGTTGGC
CAACTGCAGGGCTCTGTCTGATGCACTCACAGAGCTAGGCTACAAAATAGTCACAGGTGGCTCTGATAAT
CACTTGATCCTAATGGATCTGCGTTCTAAGGGTACTGATGGTGGAAGGGCTGAGAAGGTACTAGAAGCCT
GTTCTATCGCCTGCAACAAGAATACCTGCCCAGGTGACAAGAGCGCGTTACGGCCCAGTGGACTGCGACT
GGGGACTCCAGCATTGACATCCCGAGGACTTTTGGAAGAAGACTTCCAAAAAGTAGCACACTTTATCCAC
AGGGGGATAGAGTTGACACTGCAGATTCAGAGCCACATGGCCACGAAGGCCACACTGAAAGAGTTCAAAG
AGAAGCTGGCAGGAGATGAGAAGATCCAGAGTGCTGTGGCAACTCTCCGGGAAGAAGTGGAGAACTTTGC
TTCCAACTTCTCACTACCTGGCCTTCCTGACTTCTGA

Translation (478 aa):
MADRDATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEG
YPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDG
GHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRK
IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYY
ELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDN
HLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIH
RGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPGLPDF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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