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Report for CCDS24899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24899.1 Public Mus musculus 11 Shbg 23 108 98 CCDS HistoryNCBI Gene:20415Re-query CCDS DB by CCDS ID:24899.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005334.2 ENSMUSP00000005334.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005334.2Link to Ensembl Protein Viewer:ENSMUSP00000005334.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000005334Re-query CCDS DB by Protein ID:ENSMUSP00000005334
Original member Current member NCBI NM_011367.2 NP_035497.1 Accepted alive Link to Nucleotide Sequence:NM_011367.2Link to Protein Sequence:NP_035497.1Re-query CCDS DB by Nucleotide ID:NM_011367Re-query CCDS DB by Protein ID:NP_035497Link to BLAST:NP_035497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035497.1 403 P97497 403 100% 0 0

Chromosomal Locations for CCDS 24899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69614968 69615116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69615520 69615727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69616032 69616168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69616337 69616496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69616692 69616853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69617142 69617331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69617494 69617585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69617749 69617862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGGAGAAGAGAGACTCTGTGGCCTTGCATTGGCGACTGCTTCTGCTGTTGCTACTACTGATGCCGCCTC
CCACCCACCAGGGACGGGCCCTGAGACACATTGACCCTATCCAGAGTGCCCAGGACCCTCCTGCTAAGTA
CCTCAGCAATGGCCCAGGACAAGAGCCTGTCATGGTTATGACCATTGACCTCACCAAAATCAGCAAACCC
CATTCCTCCTTTGAGTTTCGAACCTGGGATCCAGAGGGAGTGATTTTTTATGGGGACACCAACACTGAAG
ATGACTGGTTCCTGCTGGGACTGCGAGCTGGCCAGCTTGAAATCCAGCTACACAATGCCTGGGCTCGGCT
CACAGTAGGCTTTGGTCCTCGGCTGGACGATGGGAGATGGCACCCGGTGGAGCTGAAGATGAACGGGGAT
TCACTGCTGCTGTGGGTGGATGGGAAGGAGATGCTATGCCTGAGACAAATCTCTGCATCCCTGGCTGACC
ACTCCCAGCGCAGCATGAGGATTGCACTAGGGGGGCTCCTCCTCCCTACTTCCAAACTTCGGTTTCCGCT
CGTGCCTGCCCTGGACGGCTGTATTCGGCGAGATATCTGGCTGGGCCACCAGGCCCAGCTCTCAGCCTCT
CCCCGCACTAGCCTGGGAAACTGTGATGTGGACCTGCAACCTGGACTGTTCTTCCCTCCAGGGACCCACG
CAGAATTCAGTCTCCAAGACATTCCCCAGCCTCATGCAGACCCCTGGACCTTTTCTCTGGAGCTAGGATT
TAAGCTGGTGGATGGCTCAGGACAACTCCTTGCTCTTGGAACAGGAACAAATTCTTCTTGGCTTAACATT
CACCTCCAAAACCAAAGCGTGGTTCTGTCTTCCGAGGCAGAACCTAAGGTAGTTTTACCCTTGGACGTGG
GACTCCCTCTTCAGCTGACGCTGGATAGAGTCAAAGTGGTCTTGAGCCAAGGACCAAAGATGGAAGTCCT
TTCTATGTCTCTTTTGAGACCTGCCTCCCTCTGGAGACTCTGGTCCCACCCTCAGGGCCATCTCTCCCTT
GGGGCTTTACCAGGAGAGAGTTCTTCTGCTTCCTTCTGCCTGAGTGACTTTTGGGTACAAGGACAGAGAC
TGGACATAGACCAGGCCCTGAGCAGAAGCCAGGACATCTGGACTCACAGCTGCCCCCAGAGACCTAGCAA
CGATACCCGCACCTCCCACTAG

Translation (403 aa):
MEKRDSVALHWRLLLLLLLLMPPPTHQGRALRHIDPIQSAQDPPAKYLSNGPGQEPVMVMTIDLTKISKP
HSSFEFRTWDPEGVIFYGDTNTEDDWFLLGLRAGQLEIQLHNAWARLTVGFGPRLDDGRWHPVELKMNGD
SLLLWVDGKEMLCLRQISASLADHSQRSMRIALGGLLLPTSKLRFPLVPALDGCIRRDIWLGHQAQLSAS
PRTSLGNCDVDLQPGLFFPPGTHAEFSLQDIPQPHADPWTFSLELGFKLVDGSGQLLALGTGTNSSWLNI
HLQNQSVVLSSEAEPKVVLPLDVGLPLQLTLDRVKVVLSQGPKMEVLSMSLLRPASLWRLWSHPQGHLSL
GALPGESSSASFCLSDFWVQGQRLDIDQALSRSQDIWTHSCPQRPSNDTRTSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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