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Report for CCDS38540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38540.1 Public Mus musculus 3 Selenbp1 23 108 98 CCDS HistoryNCBI Gene:20341Re-query CCDS DB by CCDS ID:38540.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090839.11 ENSMUSP00000088349.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090839.11Link to Ensembl Protein Viewer:ENSMUSP00000088349.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090839Re-query CCDS DB by Protein ID:ENSMUSP00000088349
Original member Current member NCBI NM_009150.3 NP_033176.2 Accepted alive Link to Nucleotide Sequence:NM_009150.3Link to Protein Sequence:NP_033176.2Re-query CCDS DB by Nucleotide ID:NM_009150Re-query CCDS DB by Protein ID:NP_033176Link to BLAST:NP_033176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033176.2 472 P17563 472 100% 0 0

Chromosomal Locations for CCDS 38540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94933159 94933162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94936697 94936753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94936895 94937007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94937208 94937393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94937955 94938075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94939646 94939828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94940048 94940226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94942464 94942542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94942625 94942746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94943839 94943931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94944075 94944193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 94944406 94944568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCTACAAAATGCACAAAGTGTGGTCCAGGTTACTCCACCCCTCTGGAGGCCATGAAAGGACCCCGAG
AGGAGATTGTCTACTTGCCCTGCATTTACCGGAACACAGGCACTGAAGCCCCGGATTATTTGGCCACTGT
GGATGTAGACCCTAAGTCTCCCCAGTATAGCCAGGTCATCCACAGGTTGCCCATGCCCTACCTGAAGGAC
GAGCTGCACCACTCAGGATGGAACACCTGCAGCAGCTGCTTTGGGGACAGCACGAAGTCACGCAACAAGC
TGATACTGCCTGGTCTCATCTCCTCCCGCATCTACGTGGTGGATGTGGGCTCTGAGCCTCGTGCCCCGAA
GTTGCACAAGGTCATTGAAGCCAGTGAAATCCAAGCCAAGTGCAACGTGAGCAGTTTGCACACCAGCCAC
TGCCTGGCCAGTGGAGAAGTCATGGTCAGCACCTTGGGGGATCTCCAGGGTAATGGCAAAGGGAGTTTTG
TGCTGCTGGATGGGGAGACCTTCGAGGTGAAAGGGACATGGGAGAAGCCTGGGGATGCAGCTCCAATGGG
CTACGACTTCTGGTACCAGCCTCGACACAATGTCATGGTCAGCACTGAATGGGCAGCTCCCAATGTCTTC
AAAGATGGCTTCAACCCGGCTCATGTGGAGGCTGGGCTGTACGGGAGCCGCATATTTGTGTGGGACTGGC
AGCGCCATGAGATTATCCAGACCCTGCAAATGACAGATGGGCTGATACCCCTGGAGATCCGCTTCCTGCA
CGACCCAAGTGCCACCCAGGGTTTTGTAGGCTGTGCCCTCAGCTCCAACATCCAGCGCTTCTACAAGAAT
GCGGAAGGCACTTGGTCAGTGGAGAAGGTGATCCAAGTGCCCTCCAAGAAAGTGAAGGGCTGGATGTTGC
CAGAAATGCCTGGTTTGATCACCGACATCCTGCTGTCCCTGGATGACCGCTTCCTTTACTTCAGCAACTG
GCTGCATGGGGACATTCGGCAGTATGACATCTCTAACCCACAGAAGCCCCGCCTCGCTGGGCAGATCTTC
CTTGGGGGCAGCATTGTTAGAGGAGGCTCTGTGCAAGTGCTGGAGGACCAAGAGTTAACCTGTCAGCCGG
AGCCCCTAGTGGTCAAGGGAAAACGAATTCCTGGAGGCCCTCAGATGATCCAGCTCAGCTTAGATGGCAA
GCGTCTTTACGCCACTACATCACTATACAGCGCCTGGGACAAGCAGTTTTACCCTGACCTCATTAGGGAA
GGCTCCATGATGCTTCAAATTGATGTAGACACAGTAAATGGAGGGCTGAAGTTGAACCCCAACTTTCTGG
TGGACTTTGGGAAGGAGCCCCTTGGGCCAGCACTGGCTCACGAGCTTCGTTACCCAGGGGGTGACTGCAG
TTCTGACATCTGGATCTGA

Translation (472 aa):
MATKCTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKD
ELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVVDVGSEPRAPKLHKVIEASEIQAKCNVSSLHTSH
CLASGEVMVSTLGDLQGNGKGSFVLLDGETFEVKGTWEKPGDAAPMGYDFWYQPRHNVMVSTEWAAPNVF
KDGFNPAHVEAGLYGSRIFVWDWQRHEIIQTLQMTDGLIPLEIRFLHDPSATQGFVGCALSSNIQRFYKN
AEGTWSVEKVIQVPSKKVKGWMLPEMPGLITDILLSLDDRFLYFSNWLHGDIRQYDISNPQKPRLAGQIF
LGGSIVRGGSVQVLEDQELTCQPEPLVVKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFYPDLIRE
GSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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