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Report for CCDS17792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17792.1 Public Mus musculus 3 Frrs1 23 108 98 CCDS HistoryNCBI Gene:20321Re-query CCDS DB by CCDS ID:17792.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17792.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040260.10 ENSMUSP00000039487.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040260.10Link to Ensembl Protein Viewer:ENSMUSP00000039487.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040260Re-query CCDS DB by Protein ID:ENSMUSP00000039487
Original member Current member EBI ENSMUST00000195905.4 ENSMUSP00000143255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195905.4Link to Ensembl Protein Viewer:ENSMUSP00000143255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195905Re-query CCDS DB by Protein ID:ENSMUSP00000143255
Original member NCBI NM_001113478.1 NP_001106950.1 Updated not alive Link to Nucleotide Sequence:NM_001113478.1Link to Protein Sequence:NP_001106950.1Re-query CCDS DB by Nucleotide ID:NM_001113478Re-query CCDS DB by Protein ID:NP_001106950
Current member NCBI NM_001113478.2 NP_001106950.1 Accepted alive Link to Nucleotide Sequence:NM_001113478.2Link to Protein Sequence:NP_001106950.1Re-query CCDS DB by Nucleotide ID:NM_001113478Re-query CCDS DB by Protein ID:NP_001106950Link to BLAST:NP_001106950.1
Original member NCBI NM_009146.3 NP_033172.2 Updated not alive Link to Nucleotide Sequence:NM_009146.3Link to Protein Sequence:NP_033172.2Re-query CCDS DB by Nucleotide ID:NM_009146Re-query CCDS DB by Protein ID:NP_033172
Current member NCBI NM_009146.4 NP_033172.2 Accepted alive Link to Nucleotide Sequence:NM_009146.4Link to Protein Sequence:NP_033172.2Re-query CCDS DB by Nucleotide ID:NM_009146Re-query CCDS DB by Protein ID:NP_033172Link to BLAST:NP_033172.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106950.1 592 Q8K385 592 99.4932% 0 3
NP_033172.2 592 Q8K385 592 99.4932% 0 3

Chromosomal Locations for CCDS 17792.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116878255 116878450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116880767 116880903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116881758 116881852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116883049 116883196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116885107 116885289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116890905 116891003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116891840 116891987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116895488 116895601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116896678 116896793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116899163 116899249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116900604 116900701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116900953 116901011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116902314 116902457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116902930 116902991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116903069 116903161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1779 nt):
ATGGCGGCTCCCCAGATCACCCTCAGTGTCCTTGTGATTGCCTTGCTCACTTGCTCTGTGACTGCTTATC
CCAATGGCAAAGTACCAATGTCCTGTGGTGGGATGATCCCCCAACATAACCACAGCCCACAGTCTGAGCC
TATTCACCAAATCACAGTGAGTCAGACGACGTTCAAACCTGGAGACCAGATCAAAGTTACTTTATCAGGA
CCACCATTTAGAGGCTTTCTTTTGGAAGCTCGTGATGCTGAGAATTTGAGCGGCCCTCCTATTGGCTCCT
TCACTCTGATTGACAGCGAAGAGTCACAACTTCTGACCTGTACCGATGTACAGGGATTAGCTGTGAGTCA
TACAAGGTCATCCAAGAAGACAGAAATTAAAGTCTACTGGGATGCTCCAAGCCCTGCCCCAGATCACATA
CGATTTCTAGCTACAGTTGTTCAGAAATTTAAAATCTACTGGGTGAAGATTCCGAGTCCCGTAATTTCCC
AACCAAATGCTCCTCCCTTTACGACACCTAAAGCTACAACCCAACCTTTGACAACGCCACCTTCTGTCTC
ACACTTAACCAAACCATTCAGTGCCTTCGAGTGTGGGAACAAGAAGTTCTGTGTCAGGAGTCCTTTGAAC
TGTGATCCAGAGAAGGAGCCTGCATGCGTCTTCCTGTCCTTCACCAGAGACAACCAGTCAGTGATGGTTG
AAATGAGCGGACCCAGTGACGGCTATGTGTCGTTTGCATTTTCTCACGACCAGTGGATGGGTGACGATGA
TGCTTACTTGTGCATCCGTGAGGACCAGACAGTAGATATACAGTCTTCCTACTTGACAGGGAGAAGTTAT
CCTGTGATGGACTCCAGGGGGACTCTGGAGGACATGGCCTGGAGGCTGGCGGACAGCGTCATACAGTGTT
CATTCAGAAGAAACATCACCCTTCCTGAGGCTAAGAACAGATTTGTGCTGAATGAGAGCTACTACATATT
CTTCGCAGAAGGCCCGTCTCACGACGGCCGAATATTTAGGCACTCTCAGCAACCTTTGATAACATATGAA
AAATACAACGTAACAGACACTCCAAAGAGTGTAGGAGGGTCCCGCTCCTCACCCCTTTTGAAGGCTCATG
GTGCCTTAATGTTTGTGGCATGGATGACCACGGTCAGCATTGGAGTCCTGGTTGCCCGGTTCTTCAGATC
TGTTTGGTCGAAAGCTTTCTTCCTCAGGGAAGCAGCTTGGTTTCAGGTGCATCGGATGCTCATGGTAGCT
ACCTCCCTGCTCACCTGCGTTGCTTTTGTTTTGCCCTTTGTGTACCGCGGAGGCTGGAGTTGGCGCGCAG
GCTACCACCCGTACCTCGGTTGTACAGTGATGACCTTAGCTGTCCTTCAGCCTCTGCTGGCAACCTTCAG
ACCACCTTTACACGACCCAAGGAGGCAAGTGTTTAACTGGACTCACTGGAGTGTGGGGACAGCCGCTAGA
ATAATAGCAGTGGCAGCAATGTTCCTAGGAATGGATTTGCCAGGACTGAATCTTCCCAGTCCACAGAAGA
CCTACGCAATGATGGGCTTTGTGGTCTGGCACATCGGGACTGAGGTCATTCTGGAGATACATGCTTACCG
TCTCTCTAGAAAAGTTGAAATACTGGACAACGATAGGATTCAAATCCTTCAGTCACTGACTGTCGCAGAA
GCAGAGGGTCATGTTTTTAAGAAGGTGGTGTTGGCCGTTTACATATGTGGGAATGTGATTTTTCTCTCGA
TATTCTTATCTGCAATCAACCACATATGA

Translation (592 aa):
MAAPQITLSVLVIALLTCSVTAYPNGKVPMSCGGMIPQHNHSPQSEPIHQITVSQTTFKPGDQIKVTLSG
PPFRGFLLEARDAENLSGPPIGSFTLIDSEESQLLTCTDVQGLAVSHTRSSKKTEIKVYWDAPSPAPDHI
RFLATVVQKFKIYWVKIPSPVISQPNAPPFTTPKATTQPLTTPPSVSHLTKPFSAFECGNKKFCVRSPLN
CDPEKEPACVFLSFTRDNQSVMVEMSGPSDGYVSFAFSHDQWMGDDDAYLCIREDQTVDIQSSYLTGRSY
PVMDSRGTLEDMAWRLADSVIQCSFRRNITLPEAKNRFVLNESYYIFFAEGPSHDGRIFRHSQQPLITYE
KYNVTDTPKSVGGSRSSPLLKAHGALMFVAWMTTVSIGVLVARFFRSVWSKAFFLREAAWFQVHRMLMVA
TSLLTCVAFVLPFVYRGGWSWRAGYHPYLGCTVMTLAVLQPLLATFRPPLHDPRRQVFNWTHWSVGTAAR
IIAVAAMFLGMDLPGLNLPSPQKTYAMMGFVVWHIGTEVILEIHAYRLSRKVEILDNDRIQILQSLTVAE
AEGHVFKKVVLAVYICGNVIFLSIFLSAINHI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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