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Report for CCDS17207.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17207.1 Public Mus musculus 2 Stmn3 23 108 98 CCDS HistoryNCBI Gene:20262Re-query CCDS DB by CCDS ID:17207.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17207.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103045.3 ENSMUSP00000099334.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103045.3Link to Ensembl Protein Viewer:ENSMUSP00000099334.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103045Re-query CCDS DB by Protein ID:ENSMUSP00000099334
Original member Current member NCBI NM_009133.3 NP_033159.1 Accepted alive Link to Nucleotide Sequence:NM_009133.3Link to Protein Sequence:NP_033159.1Re-query CCDS DB by Nucleotide ID:NM_009133Re-query CCDS DB by Protein ID:NP_033159Link to BLAST:NP_033159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033159.1 180 O70166 180 100% 0 0

Chromosomal Locations for CCDS 17207.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181306764 181306823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181307216 181307407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181308721 181308896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181309147 181309242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181314194 181314212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCCAGCACCGTATCTGCCTACAAGGAGAAGATGAAGGAGTTATCTGTGCTGTCGCTCATTTGCTCCT
GCTTCTACTCTCAGCCTCACCCGAACACCATCTACCAGTATGGAGATATGGAAGTGAAGCAGCTGGATAA
GCGGGCCTCTGGCCAGAGCTTCGAGGTCATCCTCAAGTCTCCTTCTGACCTATCTCCAGAGAGCCCTGTG
CTCTCTTCTCCTCCCAAGAGGAAGGATGCTTCCTTGGAAGAGCTGCAGAAGCGGCTGGAGGCAGCTGAGG
AGCGGAGGAAGACTCAGGAGGCTCAGGTGCTGAAGCAGCTGGCAGAGCGGCGTGAGCATGAACGGGAGGT
GCTGCACAAGGCGCTTGAAGAAAACAATAACTTTAGCCGCCTGGCGGAGGAGAAGCTCAACTACAAGATG
GAGCTGAGCAAGGAGATCCGCGAGGCGCACTTGGCAGCGCTGCGCGAGCGGCTGCGCGAGAAGGAGCTGC
ACGCTGCTGAGGTGCGCAGGAACAAGGAGCAGCGGGAGGAAATGTCTGGCTAA

Translation (180 aa):
MASTVSAYKEKMKELSVLSLICSCFYSQPHPNTIYQYGDMEVKQLDKRASGQSFEVILKSPSDLSPESPV
LSSPPKRKDASLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSRLAEEKLNYKM
ELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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