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Report for CCDS38683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38683.1 Public Mus musculus 3 Rpe65 23 108 98 CCDS HistoryNCBI Gene:19892Re-query CCDS DB by CCDS ID:38683.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029824.8 ENSMUSP00000029824.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029824.8Link to Ensembl Protein Viewer:ENSMUSP00000029824.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029824Re-query CCDS DB by Protein ID:ENSMUSP00000029824
Original member Current member EBI ENSMUST00000196999.4 ENSMUSP00000143654.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196999.4Link to Ensembl Protein Viewer:ENSMUSP00000143654.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196999Re-query CCDS DB by Protein ID:ENSMUSP00000143654
Original member Current member NCBI NM_029987.2 NP_084263.2 Accepted alive Link to Nucleotide Sequence:NM_029987.2Link to Protein Sequence:NP_084263.2Re-query CCDS DB by Nucleotide ID:NM_029987Re-query CCDS DB by Protein ID:NP_084263Link to BLAST:NP_084263.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084263.2 533 Q91ZQ5 533 100% 0 0

Chromosomal Locations for CCDS 38683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159599233 159599243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159600317 159600399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159601518 159601668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159604337 159604444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159604535 159604676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159606361 159606508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159614138 159614219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159614438 159614570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159614666 159614805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159615551 159615680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159622597 159622711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159622800 159622894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159622998 159623109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159624648 159624799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGTCTATCCAAATTGAACACCCTGCTGGTGGCTACAAGAAACTATTTGAAACTGTGGAGGAACTGTCCT
CACCACTAACAGCTCATGTCACAGGCAGGATTCCCCTCTGGCTCACTGGCAGTCTCCTCCGATGTGGGCC
AGGGCTCTTTGAAGTTGGATCTGAGCCTTTCTATCACCTGTTTGATGGACAAGCCCTTTTGCACAAGTTT
GACTTCAAGGAGGGCCATGTCACATACCACAGAAGATTCATCCGCACTGATGCTTATGTTCGAGCAATGA
CTGAGAAGAGGATTGTCATAACAGAATTTGGCACCTGTGCTTTCCCAGACCCCTGCAAGAATATATTTTC
CAGGTTTTTTTCTTACTTTAAAGGAGTAGAGGTTACTGACAATGCCCTTGTAAATATCTACCCAGTGGGA
GAAGATTACTATGCATGCACAGAGACCAACTTTATCACAAAGATTAACCCAGAGACCTTGGAGACAATTA
AGCAGGTTGATCTTTGCAACTATATTTCTGTCAATGGTGCCACTGCTCATCCACATATTGAAAGTGATGG
AACAGTTTACAACATTGGGAATTGCTTTGGAAAAAATTTTACAGTTGCCTACAACATTATTAAGATCCCT
CCACTGAAAGCAGACAAGGAAGATCCAATAAACAAGTCAGAAGTTGTTGTGCAGTTCCCCTGCAGTGATC
GTTTCAAGCCATCTTATGTACACAGTTTTGGTCTGACTCCCAACTATATCGTTTTTGTGGAGACTCCAGT
CAAAATTAACCTTTTCAAGTTTCTTTCTTCGTGGAGTCTTTGGGGAGCCAACTACATGGACTGTTTCGAG
TCCAATGAAAGCATGGGGGTTTGGCTTCATGTTGCTGATAAAAAAAGAAGAAAATACTTCAATAACAAAT
ACAGGACTTCCCCTTTCAATCTCTTCCATCATATCAATACTTATGAAGACAATGGATTTCTGATTGTGGA
TCTCTGTTGCTGGAAAGGGTTTGAATTTGTTTATAATTACTTATATTTAGCCAATTTACGTGAGAATTGG
GAAGAAGTTAAAAGAAATGCTATGAAGGCTCCTCAGCCTGAAGTCAGGAGATATGTACTTCCTTTGACAA
TTGACAAGGTCGACACAGGCAGAAATTTAGTCACACTGCCCCATACAACTGCCACAGCCACTCTGCGCAG
TGATGAGACCATATGGCTGGAACCTGAGGTTCTCTTTTCAGGGCCTCGTCAAGCCTTTGAATTTCCTCAA
ATCAATTACCAGAAATTTGGAGGGAAACCTTATACTTATGCATACGGACTTGGGTTGAATCACTTTGTTC
CTGACAAGCTCTGTAAGATGAACGTCAAAACTAAAGAAATCTGGATGTGGCAAGAGCCAGATTCTTACCC
ATCTGAACCCATCTTTGTTTCTCAACCAGATGCTCTGGAAGAAGATGATGGTGTGGTTCTGAGTGTGGTG
GTGAGCCCTGGGGCAGGGCAAAAGCCTGCATATCTCCTGGTTCTGAATGCCAAAGACTTGAGTGAAATTG
CCAGGGCTGAAGTGGAGACTAATATCCCTGTGACCTTCCATGGACTGTTCAAAAGATCCTGA

Translation (533 aa):
MSIQIEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKF
DFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFKGVEVTDNALVNIYPVG
EDYYACTETNFITKINPETLETIKQVDLCNYISVNGATAHPHIESDGTVYNIGNCFGKNFTVAYNIIKIP
PLKADKEDPINKSEVVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFE
SNESMGVWLHVADKKRRKYFNNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENW
EEVKRNAMKAPQPEVRRYVLPLTIDKVDTGRNLVTLPHTTATATLRSDETIWLEPEVLFSGPRQAFEFPQ
INYQKFGGKPYTYAYGLGLNHFVPDKLCKMNVKTKEIWMWQEPDSYPSEPIFVSQPDALEEDDGVVLSVV
VSPGAGQKPAYLLVLNAKDLSEIARAEVETNIPVTFHGLFKRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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