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Report for CCDS25757.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25757.1 Public Mus musculus 11 Rfng 23 108 98 CCDS HistoryNCBI Gene:19719Re-query CCDS DB by CCDS ID:25757.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25757.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026156.7 ENSMUSP00000026156.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026156.7Link to Ensembl Protein Viewer:ENSMUSP00000026156.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026156Re-query CCDS DB by Protein ID:ENSMUSP00000026156
Original member Current member NCBI NM_009053.2 NP_033079.1 Accepted alive Link to Nucleotide Sequence:NM_009053.2Link to Protein Sequence:NP_033079.1Re-query CCDS DB by Nucleotide ID:NM_009053Re-query CCDS DB by Protein ID:NP_033079Link to BLAST:NP_033079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033079.1 332 O09009 332 100% 0 0

Chromosomal Locations for CCDS 25757.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120781822 120781903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120781979 120782064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120782383 120782548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120782629 120782717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120783007 120783160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120783268 120783370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120783735 120783783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120783893 120784162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGAGCCGTGCGCGGCGGGTGTTGTGCCGGGCCTGCCTCGCGCTGGCCGCGGTCCTGGCTGTGTTGCTGC
TACTGCCGCTGCCGCTACCGCTGCCGCTGCCTCGCGCGCCCGCACCGGACCCCGATCGGGTCCCGACCCG
GAGCCTGACCCTCGAGGGAGACCGCCTGCAACCCGACGACGTCTTCATTGCAGTCAAGACCACTCGGAAG
AACCACGGCCCGCGCCTGCGGCTGCTGCTGCGTACCTGGATCTCACGAGCCCCACGGCAGACGTTCATTT
TCACCGATGGAGACGACCCTGAGCTCCAGATGCTGGCAGGCGGCCGCATGATCAACACCAATTGCTCTGC
TGTGCGCACCCGCCAAGCACTGTGCTGCAAAATGTCGGTGGAATATGATAAGTTCCTAGAATCTGGACGA
AAATGGTTCTGCCACGTGGATGATGACAACTACGTGAACCCCAAAAGCCTGCTGCACCTGCTTTCCACCT
TCTCTTCCAACCAGGACATCTACCTGGGGCGACCTAGCCTGGACCACCCCATCGAAGCCACAGAGAGGGT
CCAAGGCGGTGGCACCTCAAACACAGTGAAATTCTGGTTTGCTACTGGTGGGGCTGGGTTCTGCCTGAGC
AGGGGCCTTGCCCTCAAAATGAGCCCGTGGGCCAGCCTTGGCAGTTTCATGAGCACAGCAGAGCGGGTTC
GGCTGCCTGATGACTGCACTGTGGGATACATCGTGGAAGGACTTCTGGGCGCCCGTCTGCTCCATAGCCC
CCTGTTCCACTCGCACCTGGAAAACCTGCAGAGGCTGCCGTCTGGTGCTATTTTGCAGCAGGTTACCTTG
AGCTATGGGGGTCCTGAGAACCCACATAATGTGGTGAATGTAGCTGGCAGTTTCAACATACAGCAGGACC
CTACACGGTTTCAGTCTGTGCACTGCCTTCTCTACCCAGACACCCACTGGTGTCCTATGAAGAACAGGGT
TGAGGGAGCTTTCCAGTAA

Translation (332 aa):
MSRARRVLCRACLALAAVLAVLLLLPLPLPLPLPRAPAPDPDRVPTRSLTLEGDRLQPDDVFIAVKTTRK
NHGPRLRLLLRTWISRAPRQTFIFTDGDDPELQMLAGGRMINTNCSAVRTRQALCCKMSVEYDKFLESGR
KWFCHVDDDNYVNPKSLLHLLSTFSSNQDIYLGRPSLDHPIEATERVQGGGTSNTVKFWFATGGAGFCLS
RGLALKMSPWASLGSFMSTAERVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPSGAILQQVTL
SYGGPENPHNVVNVAGSFNIQQDPTRFQSVHCLLYPDTHWCPMKNRVEGAFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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