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Report for CCDS19372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19372.1 Public Mus musculus 5 Rest 23 108 98 CCDS HistoryNCBI Gene:19712Re-query CCDS DB by CCDS ID:19372.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080359.11 ENSMUSP00000079231.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080359.11Link to Ensembl Protein Viewer:ENSMUSP00000079231.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080359Re-query CCDS DB by Protein ID:ENSMUSP00000079231
Original member Current member EBI ENSMUST00000113449.1 ENSMUSP00000109076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113449.1Link to Ensembl Protein Viewer:ENSMUSP00000109076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113449Re-query CCDS DB by Protein ID:ENSMUSP00000109076
Original member Current member NCBI NM_011263.2 NP_035393.2 Accepted alive Link to Nucleotide Sequence:NM_011263.2Link to Protein Sequence:NP_035393.2Re-query CCDS DB by Nucleotide ID:NM_011263Re-query CCDS DB by Protein ID:NP_035393Link to BLAST:NP_035393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035393.2 1082 Q8VIG1-1 1082 100% 0 0

Chromosomal Locations for CCDS 19372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77267941 77268823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77275234 77275317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77280703 77282984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3249 nt):
ATGGCCACCCAGGTGATGGGGCAGTCTTCTGGAGGAGGCAGTCTCTTCAACAACAGTGCCAACATGGGCA
TGGCCTTAACCAACGACATGTACGACCTGCACGAGCTCTCGAAAGCTGAACTGGCAGCCCCTCAGCTCAT
CATGTTAGCCAACGTGGCCCTGACGGGGGAGGCAAGCGGCAGCTGCTGCGATTACCTGGTCGGTGAAGAG
AGGCAGATGGCCGAATTGATGCCCGTGGGAGACAACCACTTCTCAGAAAGTGAAGGAGAAGGCCTGGAAG
AGTCGGCTGACCTCAAAGGGCTGGAAAACATGGAACTGGGAAGTTTGGAGCTAAGTGCTGTAGAACCCCA
GCCCGTATTTGAAGCCTCAGCTGCCCCAGAAATATACAGCGCCAATAAAGATCCCGCTCCAGAAACACCC
GTGGCGGAAGACAAATGCAGGAGTTCTAAGGCCAAGCCCTTCCGGTGTAAGCCTTGCCAGTACGAAGCCG
AATCTGAAGAGCAGTTTGTGCATCACATCCGGATTCACAGCGCTAAGAAGTTCTTTGTGGAGGAAAGTGC
AGAGAAACAGGCCAAAGCCTGGGAGTCGGGGTCGTCTCCGGCCGAAGAGGGCGAGTTCTCCAAAGGCCCC
ATCCGCTGTGACCGCTGTGGCTACAATACCAACCGGTATGACCACTACATGGCACACCTGAAGCACCACC
TGCGAGCTGGCGAGAACGAGCGCATCTACAAGTGCATCATCTGCACGTACACGACGGTCAGCGAGTACCA
CTGGAGGAAACACCTGAGAAACCATTTCCCCAGGAAAGTCTACACCTGCAGCAAGTGCAACTACTTCTCA
GACAGAAAAAATAACTACGTTCAGCACGTGCGAACTCACACAGGAGAACGCCCGTATAAATGTGAACTTT
GTCCTTACTCAAGCTCTCAGAAGACTCATCTAACGCGACACATGCGGACTCATTCAGGTGAGAAGCCATT
TAAATGTGATCAGTGCAATTATGTGGCCTCTAATCAGCATGAAGTGACCCGACATGCAAGACAGGTTCAC
AACGGGCCTAAACCTCTTAATTGCCCGCACTGTGACTACAAAACAGCAGATAGAAGCAACTTCAAAAAGC
ACGTGGAGCTGCATGTTAACCCACGGCAGTTCAACTGCCCCGTGTGTGACTACGCGGCTTCTAAGAAGTG
TAATCTACAATACCATTTCAAATCTAAGCATCCCACCTGTCCCAGCAAAACAATGGATGTCTCCAAAGTG
AAGCTAAAGAAAACCAAAAAGAGAGAGGCTGACCTGCTTAATAACGCCGTCAGCAACGAGAAGATGGAGA
ATGAGCAAACAAAAACAAAGGGGGATGTGTCTGGGAAGAAGAACGAGAAACCTGTAAAAGCTGTGGGAAA
AGATGCTTCAAAAGAGAAGAAGCCTGGTAGCAGTGTCTCAGTGGTCCAGGTAACTACCAGGACTCGGAAG
TCAGCGGTGGCGGCGGAGACTAAAGCAGCAGAGGTGAAACACACAGACGGACAAACAGGAAACAATCCAG
AAAAGCCCTGTAAAGCCAAGAAAAACAAAAGAAAGAAGGATGCTGAGGCCCATCCCTCCGAAGAGCCTGT
GAACGAGGGACCAGTGACAAAAAAGAAAAAGAAGTCTGAGTGCAAATCAAAAATCGGTACCAACGTGCCA
AAGGGCGGCGGCCGAGCGGAGGAGAGGCCGGGGGTCAAGAAGCAAAGCGCTTCCCTTAAGAAAGGCACAA
AGAAGACGCCGCCCAAGACAAAGACAAGTAAAAAAGGTGGCAAACTTGCTCCAAAGGGGATGGGGCAGAC
AGAACCTTCTTCTGGGGCATTGGCTCAAGTGGGGGTGTCTCCAGACCCTGCCCTCATTCAGGCAGAGGTC
ACCGGGTCAGGATCTTCTCAGACAGAGCTTCCTTCACCCATGGATATTGCTAAGTCAGAGCCCGCCCAGA
TGGAGGTTTCCCTAACAGGGCCACCTCCGGTGGAGCCTGCTCAAATGGAGCCATCGCCTGCGAAACCTCC
CCAGGTAGAAGCACCCACTTACCCCCAGCCTCCCCAAAGGGGGCCTGCCCCTCCCACGGGGCCTGCCCCT
CCCACGGGGCCTGCCCCTCCCACGGAGCCTGCCCCTCCCACGGGGCTTGCCGAGATGGAACCTTCTCCCA
CGGAGCCTTCCCAGAAGGAACCACCTCCCAGTATGGAGCCTCCCTGCCCCGAGGAGCTGCCTCAGGCCGA
GCCACCTCCTATGGAGGATTGTCAGAAGGAGCTGCCTTCTCCCGTGGAGCCCGCTCAGATTGAGGTTGCT
CAGACGGCCCCTACGCAGGTTCAGGAGGAGCCCCCTCCTGTCTCGGAGCCACCTCGGGTGAAGCCAACCA
AAAGATCATCTCTCCGGAAAGACAGAGCAGAGAAGGAGCTGAGCCTGCTGAGTGAGATGGCGCGGCAGGA
GCAGGTCCTCATGGGGGTTGGCTTGGTGCCTGTTAGAGACAGCAAGCTTCTGAAGGGAAACAAGAGCGCC
CAGGACCCCCCAGCCCCACCGTCACCATCGCCAAAGGGAAACTCGAGGGAAGAGACACCCAAGGACCAAG
AAATGGTCTCTGATGGGGAAGGAACTATAGTATTCCCTCTCAAGAAAGGAGGACCAGAGGAAGCTGGAGA
GAGTCCAGCTGAGTTGGCTGCTCTCAAGGAGTCTGCCCGTGTTTCATCCTCTGAACAAAACTCAGCCATG
CCAGAGGGTGGAGCATCACACAGCAAGTGTCAGACTGGCTCCTCTGGGCTTTGTGACGTGGACACTGAGC
AGAAGACAGATACTGTCCCCATGAAAGACTCCGCAGCAGAGCCAGTGTCCCCTCCTACCCCAACAGTGGA
CCGTGACGCAGGGTCACCAGCTGTAGTGGCCTCCCCTCCTATCACGTTGGCTGAAAACGAGTCTCAGGAA
ATTGATGAAGATGAAGGCATCCATAGCCATGATGGAAGTGACCTGAGTGACAACATGTCTGAGGGGAGTG
ACGACTCAGGACTGCACGGGGCTCGGCCGACACCACCAGAAGCTACGTCAAAAAATGGGAAGGCAGGGTT
GGCTGGTAAAGTGACTGAGGGAGAGTTTGTGTGTATTTTCTGTGATCGTTCTTTTAGAAAGGAAAAAGAT
TATAGCAAACACCTCAATCGCCACTTGGTGAATGTGTACTTCCTAGAAGAAGCAGCTGAGGAGCAGGAGG
AGCAGGAGGAGCGGGAGGAGCAGGAGTAG

Translation (1082 aa):
MATQVMGQSSGGGSLFNNSANMGMALTNDMYDLHELSKAELAAPQLIMLANVALTGEASGSCCDYLVGEE
RQMAELMPVGDNHFSESEGEGLEESADLKGLENMELGSLELSAVEPQPVFEASAAPEIYSANKDPAPETP
VAEDKCRSSKAKPFRCKPCQYEAESEEQFVHHIRIHSAKKFFVEESAEKQAKAWESGSSPAEEGEFSKGP
IRCDRCGYNTNRYDHYMAHLKHHLRAGENERIYKCIICTYTTVSEYHWRKHLRNHFPRKVYTCSKCNYFS
DRKNNYVQHVRTHTGERPYKCELCPYSSSQKTHLTRHMRTHSGEKPFKCDQCNYVASNQHEVTRHARQVH
NGPKPLNCPHCDYKTADRSNFKKHVELHVNPRQFNCPVCDYAASKKCNLQYHFKSKHPTCPSKTMDVSKV
KLKKTKKREADLLNNAVSNEKMENEQTKTKGDVSGKKNEKPVKAVGKDASKEKKPGSSVSVVQVTTRTRK
SAVAAETKAAEVKHTDGQTGNNPEKPCKAKKNKRKKDAEAHPSEEPVNEGPVTKKKKKSECKSKIGTNVP
KGGGRAEERPGVKKQSASLKKGTKKTPPKTKTSKKGGKLAPKGMGQTEPSSGALAQVGVSPDPALIQAEV
TGSGSSQTELPSPMDIAKSEPAQMEVSLTGPPPVEPAQMEPSPAKPPQVEAPTYPQPPQRGPAPPTGPAP
PTGPAPPTEPAPPTGLAEMEPSPTEPSQKEPPPSMEPPCPEELPQAEPPPMEDCQKELPSPVEPAQIEVA
QTAPTQVQEEPPPVSEPPRVKPTKRSSLRKDRAEKELSLLSEMARQEQVLMGVGLVPVRDSKLLKGNKSA
QDPPAPPSPSPKGNSREETPKDQEMVSDGEGTIVFPLKKGGPEEAGESPAELAALKESARVSSSEQNSAM
PEGGASHSKCQTGSSGLCDVDTEQKTDTVPMKDSAAEPVSPPTPTVDRDAGSPAVVASPPITLAENESQE
IDEDEGIHSHDGSDLSDNMSEGSDDSGLHGARPTPPEATSKNGKAGLAGKVTEGEFVCIFCDRSFRKEKD
YSKHLNRHLVNVYFLEEAAEEQEEQEEREEQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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