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Report for CCDS24480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24480.1 Public Mus musculus 11 Rel 23 108 98 CCDS HistoryNCBI Gene:19696Re-query CCDS DB by CCDS ID:24480.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102864.4 ENSMUSP00000099928.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102864.4Link to Ensembl Protein Viewer:ENSMUSP00000099928.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102864Re-query CCDS DB by Protein ID:ENSMUSP00000099928
Original member Current member NCBI NM_009044.3 NP_033070.2 Accepted alive Link to Nucleotide Sequence:NM_009044.3Link to Protein Sequence:NP_033070.2Re-query CCDS DB by Nucleotide ID:NM_009044Re-query CCDS DB by Protein ID:NP_033070Link to BLAST:NP_033070.2

Chromosomal Locations for CCDS 24480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 23742265 23743040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23744239 23744307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23744437 23744505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23745429 23745641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23745746 23745850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23748751 23748891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23753217 23753308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23756899 23757047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23761013 23761155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23770680 23770689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCCTCGAGTGGATATAATCCATACGTAGAAATAATTGAACAGCCAAGGCAGAGGGGAATGCGGTTTA
GATACAAGTGTGAAGGGCGATCAGCAGGTAGCATCCCAGGGGAGCGCAGCACAGACAACAACCGGACATA
CCCGTCTGTCCAGATTATGAACTACTATGGAAAAGGAAAAATAAGAATTACATTAGTAACAAAGAATGAT
CCATATAAGCCTCATCCTCATGATTTAGTTGGAAAAGATTGCAGAGATGGATACTATGAAGCAGAATTTG
GACCAGAACGCAGACCTTTGTTTTTTCAAAATTTGGGTATTCGGTGTGTAAAGAAAAAGGAAGTGAAAGA
AGCTATTATTTTAAGGATTAGTGCAGGAATCAATCCTTTCAATGTCCCTGAACAGCAGCTGCTGGACATT
GAAGACTGCGACCTCAATGTGGTGAGGCTGTGTTTTCAAGTTTTCCTTCCTGATGAACATGGTAACTTCA
CAACTGCTCTGCCTCCCATTGTTTCTAACCCAATTTATGACAACCGTGCCCCAAATACTGCAGAATTAAG
GATCTGCCGTGTGAACAAGAACTGTGGAAGTGTCAGGGGAGGAGATGAAATATTTCTGCTTTGTGACAAA
GTTCAGAAAGATGATATAGAAGTTCGTTTTGTGTTGAATGACTGGGAAGCCAGAGGTGTTTTTTCACAAG
CTGATGTACACCGCCAAGTAGCCATTGTTTTCAAGACTCCTCCGTATTGCAAAGCTATACTGGAGCCTGT
GACAGTGAAAATGCAGCTGCGGAGGCCTTCTGACCAGGAAGTTAGTGAGTCTATGGATTTCAGATACCTG
CCAGATGAAAAAGATGCATATGGCAATAAATCAAAGAAACAAAAAACAACTCTGATTTTTCAGAAACTGC
TGCAAGATTGTGGTCACTTTACTGAGAAACCAAGAACTGCCCCTCTGGGATCAACTGGAGAAGGAAGATT
CATCAAAAAAGAATCAAACTTATTTTCTCATGGTACAGTTTTACCAGAAATGCCCAGGTCTTCAGGAGTT
CCAGGGCAAGCTGAACCTTACTATTCTTCATGCGGGTCCATCTCGAGTGGATTGCCACATCACCCACCAG
CCATACCCTCAGTGGCCCATCAGCCTACAAGCTGGCCACCAGTGACTCACCCCACCTCACACCCAGTCAG
TACAAATACCCTGAGTACTTTCTCAGCGGGAACACTTTCCTCTAATTCACAAGGTATCCTTCCATTCCTA
GAAGGGCCTGGTGTCAGCGACTTGAGTGCATCTAATTCGTGCCTTTATAATCCTGATGACCTAGCTAGAA
TGGAAACGCCATCCATGTCACCAACTGACTTATACAGTATCTCTGATGTCAACATGCTATCTACTCGGCC
TCTGAGTGTGATGGCACCCAGCACTGATGGCATGGGGGACACTGACAACCCAAGACTTGTGAGCATCAAT
CTTGAAAACCCCTCATGTAATGCCAGGCTAGGCCCAAGAGACCTGAGACAACTACATCAGATGTCTCCTG
CCAGTCTGTCCGCGGGCACCAGCTCCAGTTCTGTTTTTGTTTCACAGTCAGATGCATTTGATAGATCAAA
CTTCAGTTGTGTAGATAATGGCCTGATGAATGAGCCTGGACTATCAGATGACGCAAATAATCCTACCTTT
GTTCAGAGCAGTCACTATTCAAGTGTTAACACTCTGCAAAGTGAGCAACTGAGTGATCCCTTCACATATG
GTTTTTTTAAAATATAA

Translation (588 aa):
MASSGYNPYVEIIEQPRQRGMRFRYKCEGRSAGSIPGERSTDNNRTYPSVQIMNYYGKGKIRITLVTKND
PYKPHPHDLVGKDCRDGYYEAEFGPERRPLFFQNLGIRCVKKKEVKEAIILRISAGINPFNVPEQQLLDI
EDCDLNVVRLCFQVFLPDEHGNFTTALPPIVSNPIYDNRAPNTAELRICRVNKNCGSVRGGDEIFLLCDK
VQKDDIEVRFVLNDWEARGVFSQADVHRQVAIVFKTPPYCKAILEPVTVKMQLRRPSDQEVSESMDFRYL
PDEKDAYGNKSKKQKTTLIFQKLLQDCGHFTEKPRTAPLGSTGEGRFIKKESNLFSHGTVLPEMPRSSGV
PGQAEPYYSSCGSISSGLPHHPPAIPSVAHQPTSWPPVTHPTSHPVSTNTLSTFSAGTLSSNSQGILPFL
EGPGVSDLSASNSCLYNPDDLARMETPSMSPTDLYSISDVNMLSTRPLSVMAPSTDGMGDTDNPRLVSIN
LENPSCNARLGPRDLRQLHQMSPASLSAGTSSSSVFVSQSDAFDRSNFSCVDNGLMNEPGLSDDANNPTF
VQSSHYSSVNTLQSEQLSDPFTYGFFKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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