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Report for CCDS18504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18504.1 Public Mus musculus 4 Rad54l 23 108 98 CCDS HistoryNCBI Gene:19366Re-query CCDS DB by CCDS ID:18504.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102704.3 ENSMUSP00000099765.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102704.3Link to Ensembl Protein Viewer:ENSMUSP00000099765.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102704Re-query CCDS DB by Protein ID:ENSMUSP00000099765
Original member Current member EBI ENSMUST00000102705.9 ENSMUSP00000099766.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102705.9Link to Ensembl Protein Viewer:ENSMUSP00000099766.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102705Re-query CCDS DB by Protein ID:ENSMUSP00000099766
Original member NCBI NM_001122958.1 NP_001116430.1 Updated not alive Link to Nucleotide Sequence:NM_001122958.1Link to Protein Sequence:NP_001116430.1Re-query CCDS DB by Nucleotide ID:NM_001122958Re-query CCDS DB by Protein ID:NP_001116430
Current member NCBI NM_001122958.2 NP_001116430.1 Accepted alive Link to Nucleotide Sequence:NM_001122958.2Link to Protein Sequence:NP_001116430.1Re-query CCDS DB by Nucleotide ID:NM_001122958Re-query CCDS DB by Protein ID:NP_001116430Link to BLAST:NP_001116430.1
Original member NCBI NM_001122959.1 NP_001116431.1 Updated not alive Link to Nucleotide Sequence:NM_001122959.1Link to Protein Sequence:NP_001116431.1Re-query CCDS DB by Nucleotide ID:NM_001122959Re-query CCDS DB by Protein ID:NP_001116431
Current member NCBI NM_001122959.2 NP_001116431.1 Accepted alive Link to Nucleotide Sequence:NM_001122959.2Link to Protein Sequence:NP_001116431.1Re-query CCDS DB by Nucleotide ID:NM_001122959Re-query CCDS DB by Protein ID:NP_001116431Link to BLAST:NP_001116431.1
Original member NCBI NM_009015.3 NP_033041.3 Updated not alive Link to Nucleotide Sequence:NM_009015.3Link to Protein Sequence:NP_033041.3Re-query CCDS DB by Nucleotide ID:NM_009015Re-query CCDS DB by Protein ID:NP_033041
Current member NCBI NM_009015.4 NP_033041.3 Accepted alive Link to Nucleotide Sequence:NM_009015.4Link to Protein Sequence:NP_033041.3Re-query CCDS DB by Nucleotide ID:NM_009015Re-query CCDS DB by Protein ID:NP_033041Link to BLAST:NP_033041.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116430.1 747 P70270 747 100% 0 0
NP_001116431.1 747 P70270 747 100% 0 0
NP_033041.3 747 P70270 747 100% 0 0

Chromosomal Locations for CCDS 18504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116097161 116097371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116097458 116097621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116098485 116098664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116098940 116099018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116099338 116099461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116099637 116099747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116100268 116100398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116100539 116100613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116101829 116101955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116105758 116105908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116109969 116110093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116110318 116110606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116110687 116110756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116111191 116111326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116112481 116112541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116118838 116118957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116122896 116122982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116123062 116123064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2244 nt):
ATGAGGAGGAGCTTAGCTCCCAGCCAGTTGGCTAGGAGGAAACCAGAAGACAGATCATCAGATGATGAAG
ACTGGCAGCCTGGGACAGTAACTCCTAAGAAACGCAAGTCCAGCAGTGAGACCCAGGTCCAGGAGTGTTT
CCTGTCTCCTTTTCGGAAGCCCTTGACTCAGCTACTCAACCGGCCACCTTGTCTGGATAGCAGTCAACAT
GAAGCATTTATTCGAAGTATTTTGTCAAAGCCTTTCAAGGTCCCCATCCCAAATTATCAAGGTCCCCTGG
GCTCTCGTGCATTGGGCCTGAAAAGGGCTGGAGTTCGTCGTGCCCTTCATGACCCTCTGGAAGAAGGTGC
CTTGGTTCTCTATGAGCCTCCCCCACTCAGCGCCCATGACCAACTGAAGCTTGACAAGGAAAAACTCCCT
GTTCACGTGGTTGTTGATCCTATTCTCAGTAAGGTATTGCGGCCTCATCAGAGAGAGGGAGTGAAGTTCC
TATGGGAGTGTGTCACCAGTCGTCGAATTCCTGGAAGCCATGGCTGCATCATGGCTGATGAGATGGGCCT
GGGGAAGACACTGCAGTGCATCACATTGATGTGGACACTTTTACGCCAGAGCCCAGAATGCAAGCCAGAA
ATCGAGAAGGCAGTGGTGGTGTCACCTTCTAGCCTGGTGAAGAACTGGTACAATGAGGTTGAGAAATGGC
TTGGAGGGAGGATTCAACCTCTGGCCATCGATGGAGGCTCGAAGGACGAGATAGACCGAAAACTGGAAGG
ATTCATGAACCAGCGTGGAGCTAGAGTGCCTTCCCCCATCCTCATCATTTCCTATGAGACTTTCCGCCTG
CATGTTGGAGTTCTTAAAAAAGGAAATGTTGGACTGGTCATATGTGACGAGGGCCACAGGCTAAAGAACT
CTGAGAATCAGACTTACCAGGCTCTGGACAGCTTGAATACCAGCCGGCGGGTGCTAATCTCCGGGACCCC
CATCCAAAATGATTTGCTGGAGTATTTCAGCTTGGTGCACTTTGTAAATTCTGGCATTTTGGGAACTGCC
CATGAATTCAAGAAGCATTTTGAGTTGCCAATTTTGAAGAGTCGAGATGCAGCTGCCAGTGAGGCAGACA
GGCAGCGTGGGGAGGAGCGTCTGCGGGAGCTCATCGGTATTGTGAACAGGTGCCTGATACGGAGAACATC
TGATATCCTCTCTAAGTATCTGCCCGTGAAGATTGAGCAGGTGGTTTGTTGTAGGCTGACACCCCTTCAA
ACTGAGCTATACAAGAGATTTCTGAGACAGGCTAAGCCTGAAGAAGAATTGCGTGAGGGCAAGATGAGTG
TGTCTTCCCTGTCTTCTATCACCTCTCTAAAGAAGCTGTGTAATCATCCAGCTCTAATCTATGACAAGTG
TGTGGCAGAGGAGGATGGCTTTGAGGGCACTTTGGGTATCTTCCCACCTGGTTATAACTCTAAAGCTGTA
GAGCCACAGTTGTCAGGTAAGATGCTGGTCCTTGATTACATTCTGGCCGTGACTCGAAGCCGTAGCAGTG
ACAAAGTCGTGCTGGTGTCTAATTATACTCAGACATTGGATCTCTTTGAAAAGCTGTGCCGGGTTCGAAG
GTACTTGTATGTTCGCCTGGATGGCACGATGTCCATTAAGAAGCGAGCCAAGGTTGTGGAGCGCTTCAAT
AGCCCATCGAGCCCTGATTTTGTTTTCATGCTGAGCAGCAAAGCCGGGGGCTGTGGTCTTAACCTCATTG
GTGCTAACCGACTGGTCATGTTTGATCCTGACTGGAATCCAGCCAATGATGAACAAGCTATGGCCCGAGT
CTGGCGTGATGGTCAAAAGAAGATCTGCTATATCTACCGACTGCTATCTGCAGGAACAATTGAGGAGAAG
ATCTTTCAGCGGCAGAGCCACAAGAAGGCTCTGAGCAGCTGTGTGGTGGACGAGGAGCAGGATGTGGAGC
GCCACTTTTCTCTTGGTGAGCTTAAAGAGCTGTTTACTCTGGATGAAGCAAGCCTCAGTGACACACATGA
CAGATTGCATTGCCGCCGTTGTGTAAACAACCGTCAGGTCTGGCCACCCCCTGATGGTTCTGACTGCACT
TCAGACCTGGCTCAGTGGAACCACAGCACAGATAAACGAGGGCTCCAGGATGAGGTACTCCAGGCTGCCT
GGGATGCTTCATCTACAGCCATCACCTTCGTCTTCCACCAGCGTTCTCATGAGGAGCAGCGCGGTCTTCA
CTGA

Translation (747 aa):
MRRSLAPSQLARRKPEDRSSDDEDWQPGTVTPKKRKSSSETQVQECFLSPFRKPLTQLLNRPPCLDSSQH
EAFIRSILSKPFKVPIPNYQGPLGSRALGLKRAGVRRALHDPLEEGALVLYEPPPLSAHDQLKLDKEKLP
VHVVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPE
IEKAVVVSPSSLVKNWYNEVEKWLGGRIQPLAIDGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRL
HVGVLKKGNVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTA
HEFKKHFELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ
TELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEGTLGIFPPGYNSKAV
EPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVRRYLYVRLDGTMSIKKRAKVVERFN
SPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEK
IFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDEASLSDTHDRLHCRRCVNNRQVWPPPDGSDCT
SDLAQWNHSTDKRGLQDEVLQAAWDASSTAITFVFHQRSHEEQRGLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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