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Report for CCDS17806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17806.1 Public Mus musculus 3 Abcd3 23 108 98 CCDS HistoryNCBI Gene:19299Re-query CCDS DB by CCDS ID:17806.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029770.7 ENSMUSP00000029770.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029770.7Link to Ensembl Protein Viewer:ENSMUSP00000029770.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029770Re-query CCDS DB by Protein ID:ENSMUSP00000029770
Original member NCBI NM_008991.3 NP_033017.2 Updated not alive Link to Nucleotide Sequence:NM_008991.3Link to Protein Sequence:NP_033017.2Re-query CCDS DB by Nucleotide ID:NM_008991Re-query CCDS DB by Protein ID:NP_033017
Current member NCBI NM_008991.4 NP_033017.2 Accepted alive Link to Nucleotide Sequence:NM_008991.4Link to Protein Sequence:NP_033017.2Re-query CCDS DB by Nucleotide ID:NM_008991Re-query CCDS DB by Protein ID:NP_033017Link to BLAST:NP_033017.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033017.2 659 P55096 659 100% 0 0

Chromosomal Locations for CCDS 17806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121760232 121760309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121761415 121761471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121765001 121765105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121768622 121768741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121769167 121769256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121769352 121769417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121769515 121769592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121772303 121772366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121773989 121774061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121774142 121774233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121775431 121775522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121775617 121775714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121775802 121775871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121776997 121777066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121779555 121779697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121781928 121781984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121784011 121784134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121784473 121784570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121786002 121786071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121791734 121791822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121792804 121792902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121796449 121796485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121815009 121815118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1980 nt):
ATGGCGGCCTTCAGCAAGTACTTGACGGCACGGAACACCTCGCTGGCGGGGGCCGCGTTCCTGCTGCTCT
GCCTACTCCATAAGCGGCGTCGCGCCCTCGGCCTGCACGGTAAGAAAAGTGGAAAACCGCCATTACAGAA
TAATGAGAAAGAAGGAAAGAAAGAGCGAGCTGTGGTGGACAAAGTGTTTTTATCAAGGCTCTCACAGATC
CTAAAAATTATGGTTCCTAGAACATTTTGTAAAGAGACAGGCTACTTGTTACTTATTGCGGTTATGCTGG
TATCTCGAACATACTGTGATGTTTGGATGATTCAGAATGGGACGCTCATTGAGAGTGGCATCATTGGTCG
CAGCAGCAAAGATTTCAAGAGATACTTATTCAACTTCATCGCTGCCATGCCTCTTATCTCTCTGGTTAAT
AACTTCTTGAAGTATGGGTTAAATGAGCTCAAACTGTGCTTCCGAGTCAGGCTCACACGGTACCTCTACG
AGGAGTATCTCCAAGCTTTCACCTATTATAAAATGGGCAACCTGGATAACAGAATAGCAAATCCAGACCA
GCTGCTTACACAGGATGTAGAAAAATTTTGTAACAGTGTAGTCGATCTGTATTCAAATCTTAGTAAGCCA
TTTTTAGACATAGTTTTATATATTTTCAAGTTAACAAGTGCAATTGGAGCTCAGGGCCCGGCAAGCATGA
TGGCCTACTTGCTTGTTTCTGGGCTATTCCTAACTCGACTCAGAAGACCCATTGGTAAGATGACAATTAT
GGAGCAGAAGTACGAAGGAGAATACAGATACGTGAATTCACGGCTTATCACTAATAGTGAAGAAATTGCC
TTTTACAATGGGAATAAACGGGAGAAGCAGACAATCCACTCAGTCTTCCGAAAACTGGTGGAACACCTAC
ATAATTTCATTTTCTTTCGGTTTTCTATGGGTTTCATTGATAGCATCATTGCCAAATATGTTGCCACTGT
CGTCGGGTACCTGGTTGTCAGTCGCCCCTTCCTAGATCTGGCACACCCTCGCCACCTTCACAGCACACAC
TCAGAGCTGCTGGAGGATTACTACCAAAGTGGAAGGATGCTTTTGAGAATGTCTCAAGCTTTGGGTCGTA
TAGTTTTGGCTGGGCGTGAAATGACTAGATTGGCTGGTTTTACGGCTCGGATTACAGAATTAATGCAAGT
ACTAAAGGACTTAAATCATGGCAGATATGAACGTACAATGGTGTCACAACAGGAGAAGGGTATTGAAGGA
GCACAAGCTAGTCCCTTGGTCCCTGGTGCTGGAGAAATCATCAATACAGACAACATTATAAAGTTTGATC
ATGTTCCTTTAGCAACACCAAATGGTGACATCTTGATCCAAGACCTTAGTTTTGAAGTTCGATCTGGGGC
CAACGTTCTGATTTGTGGTCCAAACGGCTGTGGAAAGAGCTCCCTCTTCCGTGTTCTTGGTGAGTTATGG
CCTCTTTTTGGAGGGCGGCTTACTAAACCTGAGAGAGGAAAGTTATTTTATGTTCCTCAGCGACCCTATA
TGACCCTGGGAACACTGAGAGACCAAGTCATATATCCAGATGGAAAGGAAGATCAGAAGAAGAGGGGGAT
CTCTGACCAGGTGCTGAAGGAGTACTTGGACAATGTGCAGCTGGGTCACATCCTTGAGCGAGAAGGCGGC
TGGGACAGTGTTCAGGACTGGATGGATGTACTCAGCGGAGGAGAGAAACAAAGAATGGCGATGGCAAGAC
TGTTTTATCATAAACCCCAGTTTGCCATTTTGGATGAATGCACAAGTGCGGTCAGTGTGGATGTGGAGGA
CTACATTTACAGCCACTGTCGAAAGGTTGGCATCACCCTCTTTACCGTTTCACACAGAAAGTCCCTTTGG
AAGCACCACGAGTACTACCTGCATATGGATGGGAGAGGCAATTATGAATTCAAAAAGATCACAGAAGATA
CAGTTGAGTTCGGATCATAG

Translation (659 aa):
MAAFSKYLTARNTSLAGAAFLLLCLLHKRRRALGLHGKKSGKPPLQNNEKEGKKERAVVDKVFLSRLSQI
LKIMVPRTFCKETGYLLLIAVMLVSRTYCDVWMIQNGTLIESGIIGRSSKDFKRYLFNFIAAMPLISLVN
NFLKYGLNELKLCFRVRLTRYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDLYSNLSKP
FLDIVLYIFKLTSAIGAQGPASMMAYLLVSGLFLTRLRRPIGKMTIMEQKYEGEYRYVNSRLITNSEEIA
FYNGNKREKQTIHSVFRKLVEHLHNFIFFRFSMGFIDSIIAKYVATVVGYLVVSRPFLDLAHPRHLHSTH
SELLEDYYQSGRMLLRMSQALGRIVLAGREMTRLAGFTARITELMQVLKDLNHGRYERTMVSQQEKGIEG
AQASPLVPGAGEIINTDNIIKFDHVPLATPNGDILIQDLSFEVRSGANVLICGPNGCGKSSLFRVLGELW
PLFGGRLTKPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQKKRGISDQVLKEYLDNVQLGHILEREGG
WDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLW
KHHEYYLHMDGRGNYEFKKITEDTVEFGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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