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Report for CCDS18546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18546.1 Public Mus musculus 4 Ptprf 23 108 98 CCDS HistoryNCBI Gene:19268Re-query CCDS DB by CCDS ID:18546.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049074.12 ENSMUSP00000039368.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049074.12Link to Ensembl Protein Viewer:ENSMUSP00000039368.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049074Re-query CCDS DB by Protein ID:ENSMUSP00000039368
Original member Current member NCBI NM_011213.2 NP_035343.2 Accepted alive Link to Nucleotide Sequence:NM_011213.2Link to Protein Sequence:NP_035343.2Re-query CCDS DB by Nucleotide ID:NM_011213Re-query CCDS DB by Protein ID:NP_035343Link to BLAST:NP_035343.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035343.2 1898 A2A8L5 1898 100% 0 0

Chromosomal Locations for CCDS 18546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118209821 118209889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118210369 118210504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118210617 118210771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118211001 118211126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118211359 118211485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118211700 118211878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118211964 118212249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118212327 118212481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118212720 118212839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118213457 118213632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118213741 118213864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118217092 118217189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118220493 118220608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118223226 118223380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118223718 118223936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118224499 118224592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118224678 118224931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118225029 118225126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118225799 118226377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118226454 118226571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118230695 118230888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118231486 118231791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118234959 118235103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118235549 118235685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118235913 118236494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118237739 118238008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118248899 118249009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118257489 118257677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118269176 118269317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118269479 118269624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118277349 118277439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5697 nt):
ATGGCTCCCGAGCCAGCCCCAGGGAGGAGGATGGTGCCCCTTGTGCCTGCTCTCGTGATGCTTGGTTTGA
TGGCAGGTGCTCATGGCGACAGCAAACCCGTCTTTGTTAAGGTCCCCGAGGACCAGACTGGGCTGTCGGG
AGGGGTGGCCTCCTTCGTGTGCCAAGCCACAGGGGAACCCAAGCCTCGAATTACGTGGATGAAGAAGGGG
AAGAAAGTCAGCTCCCAGCGCTTTGAGGTAATTGAGTTTGACGATGGAGCAGGGTCAGTGCTGCGGATCC
AGCCATTACGAGTGCAGCGAGACGAAGCCATCTATGAGTGCACAGCCACGAACAGTCTCGGGGAGATCAA
CACAAGTGCCAAGCTGTCAGTGCTTGAAGAGGACCAGCTGCCGTCTGGGTTCCCGACTATCGACATGGGA
CCTCAGCTGAAGGTGGTGGAGAAGGGTCGCACTGCCACCATGCTGTGTGCAGCCGGTGGGAACCCAGACC
CTGAGATCTCTTGGTTCAAAGACTTCCTTCCTGTGGACCCTGCTGCAAGCAACGGTCGTATCAAACAGCT
GCGATCAGGTGCATTGCAGATAGAGAGCAGCGAGGAGTCTGACCAAGGCAAGTACGAGTGTGTGGCCACC
AACTCTGCAGGCACACGCTACTCGGCCCCCGCCAACCTGTATGTGCGAGTGCGTCGCGTGGCTCCTCGTT
TCTCCATCCCTCCCAGCAGCCAAGAGGTGATGCCGGGCGGCAGCGTGAATCTCACATGTGTGGCAGTGGG
CGCGCCCATGCCGTATGTGAAATGGATGATGGGCGCCGAGGAACTGACCAAAGAGGATGAGATGCCAGTC
GGCCGAAATGTTCTGGAGCTCAGCAATGTCATGCGATCTGCCAACTATACCTGTGTGGCCATCTCTTCAT
TAGGCATGATAGAAGCCACGGCCCAGGTCACAGTAAAAGCTCTGCCAAAGCCTCCAATTGATCTTGTGGT
GACAGAGACAACCGCCACCAGTGTTACTCTGACATGGGACTCTGGAAATACCGAGCCTGTGTCCTTCTAC
GGCATCCAGTACCGCGCAGCTGGCACAGACGGCCCCTTCCAGGAAGTGGATGGTGTGGCCAGCACCCGAT
ACAGCATTGGTGGCCTCAGCCCCTTTTCGGAATATGCTTTCCGTGTGTTGGCTGTTAACAGCATTGGGCG
AGGACCACCCAGTGAGGCAGTGCGAGCACGCACGGGGGAGCAGGCACCCTCCAGCCCTCCGCGCCGTGTG
CAGGCTCGAATGCTTAGCGCCAGCACCATGCTGGTCCAGTGGGAACCACCTGAAGAGCCCAATGGCCTGG
TACGGGGATATCGCGTCTACTATACCCCAGATTCCCGACGCCCTTTGAGCGCCTGGCACAAGCATAACAC
TGACGCAGGACTCCTTACCACCGTGGGCAGCCTGCTACCTGGCATCACCTACAGCCTCCGAGTCCTTGCC
TTCACTGCTGTGGGTGACGGCCCACCCAGCCCCACCATCCAAGTCAAGACACAGCAGGGAGTGCCTGCAC
AGCCTGCGGACTTCCAGGCTAACGCTGAGTCGGACACCAGGATCCAGCTCTCGTGGCTGCTGCCCCCGCA
GGAGCGGATCGTCAAGTATGAGCTGGTGTACTGGGCAGCCGAGGATGAGGGCCAGCAGCACAAGGTGACC
TTCGACCCCACCTCCTCCTACACTCTGGAGGACCTGAAGCCTGACACATTGTACCACTTCCAGCTGGCTG
CCCGTTCAGATTTGGGGGTGGGCGTCTTCACGCCCACCGTAGAGGCCCGTACAGCACAGTCCACCCCATC
AGCCCCTCCCCAGAAGGTGACATGTGTGAGCACGGGCTCCACCACGGTCCGGGTAAGTTGGGTTCCACCG
CCGGCCGACAGCCGCAACGGCATTATCACCCAGTACTCCGTGGCCTATGAGGCAGTGGACGGCGAAGACC
GTAAGCGACATGTGGTGGATGGCATCAGCCGTGAGCATTCCAGCTGGGACCTGCTGGGCCTGGAGAAGTG
GACGGAGTACCGGGTGTGGGTGCGGGCACACACAGATGTGGGCCCTGGCCCTGAGAGCAGCCCGGTGCTG
GTGCGCACCGATGAGGACGTGCCTAGCGGGCCACCACGGAAGGTAGAGGTTGAGCCTCTGAACTCCACTG
CTGTGCATGTCTCCTGGAAGCTGCCCGTCCCCAACAAGCAGCACGGACAGATTCGTGGCTACCAGGTCAC
CTATGTGCGGTTGGAGAATGGTGAGCCCCGAGGCCAACCCATCATCCAGGATGTCATGCTGGCTGAGGCT
CAGGAGACCACCATCAGCGGCCTCACCCCCGAGACCACCTACTCCATCACCGTCGCTGCCTACACCACTA
AGGGGGATGGTGCCCGAAGCAAGCCCAAGGTGGTTACTACAACAGGGGCAGTCCCAGGACGGCCCACCAT
GATGGTCAGCACCACGGCCATGCACACCGCGCTGCTGCAGTGGCACCCACCCAAGGAGCTGCCTGGAGAG
CTGCTGGGCTACCGTCTCCAATACCGGCGGGCCGACGAGGCGCGGCCCAACACCATAGACTTTGGCAAGG
ATGACCAACATTTTACAGTCACCGGCCTGCACAAAGGGGCCACCTACGTCTTCCGGCTCGCTGCCAAGAA
CCGGGCTGGCCCAGGAGAAGAGTTTGAGAAAGAGATCACCACCCCCGAGGATGTGCCCAGTGGCTTTCCT
CAAAATCTTCGAGTGACAGGACTGACCACATCTACCACGGAACTGACCTGGGACCCGCCGGTGCTGGCGG
AGAGGAATGGTCACATCACCAACTATACTGTGGTCTACCGTGACATCAACAGCCAGCTTGAACTACAGAA
TGTCACCAACGACACACACCTTACACTCTTGGGCCTTAAACCGGACACCACTTATGACATCAAGGTCCGT
GCACATACCAGCAAAGGCGCCGGCCCTCTCAGCCCCAGCATCCAGTCCCGGACCATGCCCGTGGAGCAAG
TGTTTGCCAAGAATTTCCGTGTGGCCGCTGCGATGAAGACATCTGTGCTGCTCAGTTGGGAGGTCCCCGA
CTCTTATAAGTCAGCTGTGCCCTTCAAGATCCTGTACAATGGGCAGAGCGTGGAGGTGGATGGGCACTCG
ATGCGGAAGCTGATTGCAGACCTGCAACCCAACACGGAGTACTCCTTCGTCCTGATGAATCGTGGCAGTA
GCGCCGGGGGCCTACAGCACCTGGTGTCCATCCGCACTGCCCCGGACCTCCTACCCCAGAAGCCACTGCC
TGCCTCCGCCTTTATAGAGGATGGCCGCTTCTCCCTCTCCATGCCTCAAGTGCAGGACCCCTCGCTAGTC
AGGTGGTTCTACATTGTGGTGGTGCCCATTGACCGTGTGGGCGGGAACTTGCTGGCACCAAGATGGAACA
CACCAGAGGAGTTGGAGCTGGACGAGCTTCTGGAGGCCATCGAGCAGGGCGAGGAGAAACAGCGGAGGCG
CCGGCGCCAAGCAGAGCGGCTGAAGCCTTATGTGGCGGCCCAAGTGGATGTGCTCCCTGACACCTTCACC
CTGGGGGACAAGAAGAGCTACCGCGGCTTCTACAACCGGCCCCTGTCTCCGGATCTGAGTTACCAGTGCT
TCGTTCTCGCCTCCCTCAAGGAACCCATGGACCAGAAGCGCTACGCCTCCAGCCCCTACTCGGACGAGAT
TGTAGTCCAGGTGACGCCAGCACAGCAGCAGGAGGAGCCCGAGATGCTGTGGGTGACAGGCCCTGTCCTG
GCGGTCATTCTCATCATACTCATTGTCATCGCCATCCTCCTGTTCAAGAGGAAGAGAACACACTCCCCAT
CATCAAAGGATGAGCAGTCAATCGGGCTGAAGGACTCCCTGTTGGCCCACTCTTCTGACCCTGTGGAGAT
GCGAAGGCTTAACTACCAGACCCCAGGTATGCGAGACCACCCGCCCATCCCCATCACTGACCTGGCAGAC
AATATTGAGCGCCTCAAAGCCAACGATGGGCTCAAGTTCTCCCAGGAGTATGAGTCCATTGACCCTGGAC
AGCAGTTCACATGGGAGAATTCCAACTCGGAGGTGAACAAGCCCAAGAACCGCTATGCAAATGTCATTGC
CTATGACCATTCTCGAGTCCTCCTCACCTCCATTGATGGTGTTCCTGGGAGTGACTACATCAATGCCAAC
TACATTGATGGCTACCGAAAGCAGAATGCCTACATCGCCACACAGGGTCCGCTGCCCGAGACCATGGGCG
ATTTCTGGAGGATGGTGTGGGAACAGCGCACAGCCACAGTGGTCATGATGACCAGGCTAGAGGAGAAATC
CCGGGTGAAGTGTGATCAGTATTGGCCAGTCCGTGGCACTGAGACCTATGGCCTCATTCAGGTGACCCTG
GTGGACACTGTGGAGTTGGCCACATACACCATGCGCACCTTTGCCCTCCATAAGAGTGGCTCCAGTGAGA
AGCGTGAGCTGCGTCAGTTCCAGTTCATGGCCTGGCCAGACCACGGCGTTCCTGAGTACCCCACTCCCAT
CTTGGCCTTCCTGAGACGGGTCAAGGCCTGTAACCCACTAGATGCGGGGCCCATGGTGGTGCATTGCAGT
GCGGGTGTGGGGCGCACAGGCTGCTTCATCGTCATCGACGCAATGCTGGAGCGTATGAAGCACGAGAAGA
CGGTTGACATCTATGGCCACGTGACGTGCATGCGCTCACAAAGGAACTACATGGTGCAGACCGAGGACCA
GTATGTGTTCATCCACGAGGCCCTGCTAGAGGCTGCCATGTGCGGACACACCGAGGTGCTCGCTCGGAAC
CTCTATGCCCACATCCAGAAGCTAGGCCAAGTGCCTCCCGGGGAGAGCGTCACGGCCATGGAACTTGAGT
TCAAGTTGCTGGCCAACTCCAAGGCCCACACGTCGCGCTTTGTCAGTGCCAACCTGCCCTGCAACAAGTT
CAAGAACCGCCTAGTGAACATCATGCCCTATGAGCTGACCCGAGTGTGCTTGCAACCCATCCGTGGTGTG
GAGGGCTCAGACTACATCAATGCCAGCTTTCTAGATGGCTACAGACAGCAGAAGGCCTACATAGCTACAC
AGGGGCCTCTGGCAGAGAGCACCGAGGACTTCTGGCGCATGTTATGGGAGCACAATTCCACCATCATCGT
CATGCTGACCAAGCTTCGGGAGATGGGCAGGGAGAAATGTCACCAGTACTGGCCAGCAGAGCGCTCCGCT
CGCTATCAGTACTTCGTTGTTGACCCGATGGCTGAGTACAACATGCCCCAGTATATTCTGCGTGAATTCA
AAGTCACAGACGCCCGGGATGGGCAGTCAAGGACAATCCGACAGTTCCAGTTTACAGACTGGCCAGAGCA
AGGAGTACCCAAAACAGGTGAAGGCTTCATCGACTTCATCGGGCAGGTGCACAAGACAAAGGAGCAGTTT
GGCCAGGATGGGCCCATCACGGTGCACTGCAGTGCTGGTGTGGGCCGCACCGGTGTGTTCATCACCCTGA
GCATTGTCCTGGAGCGCATGCGGTATGAGGGTGTGGTTGACATGTTCCAGACCGTGAAGACCCTCCGCAC
ACAGCGCCCTGCAATGGTGCAGACAGAGGACCAATACCAGCTGTGCTACCGTGCGGCCCTGGAATACCTC
GGCAGCTTTGATCACTATGCAACGTAA

Translation (1898 aa):
MAPEPAPGRRMVPLVPALVMLGLMAGAHGDSKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKG
KKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMG
PQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVAT
NSAGTRYSAPANLYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVAVGAPMPYVKWMMGAEELTKEDEMPV
GRNVLELSNVMRSANYTCVAISSLGMIEATAQVTVKALPKPPIDLVVTETTATSVTLTWDSGNTEPVSFY
GIQYRAAGTDGPFQEVDGVASTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQAPSSPPRRV
QARMLSASTMLVQWEPPEEPNGLVRGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLA
FTAVGDGPPSPTIQVKTQQGVPAQPADFQANAESDTRIQLSWLLPPQERIVKYELVYWAAEDEGQQHKVT
FDPTSSYTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVSTGSTTVRVSWVPP
PADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEKWTEYRVWVRAHTDVGPGPESSPVL
VRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRGQPIIQDVMLAEA
QETTISGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVPGRPTMMVSTTAMHTALLQWHPPKELPGE
LLGYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKGATYVFRLAAKNRAGPGEEFEKEITTPEDVPSGFP
QNLRVTGLTTSTTELTWDPPVLAERNGHITNYTVVYRDINSQLELQNVTNDTHLTLLGLKPDTTYDIKVR
AHTSKGAGPLSPSIQSRTMPVEQVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYNGQSVEVDGHS
MRKLIADLQPNTEYSFVLMNRGSSAGGLQHLVSIRTAPDLLPQKPLPASAFIEDGRFSLSMPQVQDPSLV
RWFYIVVVPIDRVGGNLLAPRWNTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDVLPDTFT
LGDKKSYRGFYNRPLSPDLSYQCFVLASLKEPMDQKRYASSPYSDEIVVQVTPAQQQEEPEMLWVTGPVL
AVILIILIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAHSSDPVEMRRLNYQTPGMRDHPPIPITDLAD
NIERLKANDGLKFSQEYESIDPGQQFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINAN
YIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPVRGTETYGLIQVTL
VDTVELATYTMRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCS
AGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAMCGHTEVLARN
LYAHIQKLGQVPPGESVTAMELEFKLLANSKAHTSRFVSANLPCNKFKNRLVNIMPYELTRVCLQPIRGV
EGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSA
RYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQF
GQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYL
GSFDHYAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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