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Report for CCDS23121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23121.1 Public Mus musculus 9 Ttc36 23 108 98 CCDS HistoryNCBI Gene:192653Re-query CCDS DB by CCDS ID:23121.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044694.7 ENSMUSP00000042183.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044694.7Link to Ensembl Protein Viewer:ENSMUSP00000042183.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044694Re-query CCDS DB by Protein ID:ENSMUSP00000042183
Original member Current member NCBI NM_138951.1 NP_620401.1 Accepted alive Link to Nucleotide Sequence:NM_138951.1Link to Protein Sequence:NP_620401.1Re-query CCDS DB by Nucleotide ID:NM_138951Re-query CCDS DB by Protein ID:NP_620401Link to BLAST:NP_620401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620401.1 186 Q8VBW8 186 100% 0 0

Chromosomal Locations for CCDS 23121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44799471 44799733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44801594 44801782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44802711 44802819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGGGACTCCAAATGATCAGGCAGTGTTGCAGGCCATCTTCAACCCTGATACCCCCTTTGGAGATGTTG
TTGGATTGGACCTGGAAGAAGCAGAGGAGGGAGATGAAGATGGAGTTTTCCCTCAAGCACAGTTGGAGCA
CTCCAAGGCCCTGGAGTTGCAGGGAGTGAGGGCGGCAGAAGCTGGAGACCTCCACACAGCACTGGAGAAG
TTTGGCCAAGCCATTAGCCTGCTACCTGACAGAGCCTCTGCCTACAACAACCGAGCCCAAGCCCGGCGGC
TCCAGGGGGATGTAGCAGGCGCCCTGGAGGACTTGGAGCGCGCGGTGACATTGAGCGGCGGCCGGGGTCG
CGCCGCCCGCCAGAGCTTCGTGCAGAGCGGGCTACTGGCGAGATTTCAGGGCCGGGACGACGACGCCCGC
AGGGACTTCGAGAAGGCTGCGCGACTGGGCAGCCCGTTCGCACGGCGCCAGCTAGTGCTGCTCAACCCGT
ACGCCGCGCTGTGCAACCGCATGCTGGCCGACATGATGGGGCAGCTGCGCGCGCCCAGCAACGGGCGCTG
A

Translation (186 aa):
MGTPNDQAVLQAIFNPDTPFGDVVGLDLEEAEEGDEDGVFPQAQLEHSKALELQGVRAAEAGDLHTALEK
FGQAISLLPDRASAYNNRAQARRLQGDVAGALEDLERAVTLSGGRGRAARQSFVQSGLLARFQGRDDDAR
RDFEKAARLGSPFARRQLVLLNPYAALCNRMLADMMGQLRAPSNGR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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