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Report for CCDS19540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19540.1 Public Mus musculus 5 Hps4 23 108 98 CCDS HistoryNCBI Gene:192232Re-query CCDS DB by CCDS ID:19540.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035279.3 ENSMUSP00000047920.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035279.3Link to Ensembl Protein Viewer:ENSMUSP00000047920.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035279Re-query CCDS DB by Protein ID:ENSMUSP00000047920
Original member Current member EBI ENSMUST00000112359.8 ENSMUSP00000107978.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112359.8Link to Ensembl Protein Viewer:ENSMUSP00000107978.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112359Re-query CCDS DB by Protein ID:ENSMUSP00000107978
Original member Current member NCBI NM_001359853.1 NP_001346782.1 Accepted alive Link to Nucleotide Sequence:NM_001359853.1Link to Protein Sequence:NP_001346782.1Re-query CCDS DB by Nucleotide ID:NM_001359853Re-query CCDS DB by Protein ID:NP_001346782Link to BLAST:NP_001346782.1
Original member Current member NCBI NM_138646.3 NP_619587.3 Accepted alive Link to Nucleotide Sequence:NM_138646.3Link to Protein Sequence:NP_619587.3Re-query CCDS DB by Nucleotide ID:NM_138646Re-query CCDS DB by Protein ID:NP_619587Link to BLAST:NP_619587.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346782.1 671 Q99KG7 671 100% 0 0
NP_619587.3 671 Q99KG7 671 100% 0 0

Chromosomal Locations for CCDS 19540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112345008 112345048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112346594 112346684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112349285 112349428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112363109 112363216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112363546 112363662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112364521 112364615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112366899 112366971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112368936 112368972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112369455 112369551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112369946 112370744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112374880 112375012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112375353 112375461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112377959 112378130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGCCACCACCACTCCCCCAGAGACAAAGTCAGCAGCGTGGTGGAACTACTTCTTCCTGTATGACGGTT
CCAAGGTAAAGGGAGAAGGAGACCCAACCAGAGCTGGCATCTGCTACTTCTATCCGCCCCAGACCCTGTT
AGACCAGCAGGAACTGCTCTGTGGCCAGCTTGCTGGAGTAGTGCGCTGCCTGTGGGACCTTTCTGGCACC
CCGCCCATGCTCATCCGTATGCGGAACCTCAAGTTTGCCATCAGGGCAGATGGGGACTACCTGTGGGCTC
TGGGGTGTGGTGTGGAGATCTCTGATGCCAGCTGCAGGCAGTTTCTGGATCAGCTCATTGGATTTTTTCA
TTTCTACATGGGCCCTGTCTCCCTGGCCTACAAGAGCCATCCTCAGGAGGAGCTGAGCTTGCAGTGGGAT
ACCTCCATCACACAAGTCCTCAGGAGCACCAGCGAATCGCACAGGATCTTCAATGCCCTGTGGAACCTGG
ACCGCACCAAAGTGGAGCCCCTGCTGCTGCTGAAGGCAGCTCTCATCTTACAGACCTGCCAACGCTCACC
TCATGTGCTAGCTGGCTGCATCCTCTATAAAGGACTGATTGTGAATTCCCAGCTCCTGCCTTCCCTCACT
GCTAAGGTCCTGCTTCATCAGACTGTACCTGCAGACCAGAGGCTGCCTGGAGCAGGAGCTGCCCCACAGG
AAACAGGAGCAGCGTTGCCCCCGGATGTGCAGATCACCTCTGTTTTTCTGAGTGAGGAGGAAGTTGCCAG
CCTCCACGAGTTCCCAGTAGAGCATGAAACTCGACTCCAGGGAAGTTCAGTTCAATACCCTCCCTGGGAT
CAAAGCAGCCCCACCCAGGCAGAAGATGCCTGGGCATCAGCTGCCATCCCGGAGCCCACGCCGCATGATG
GAGCATGTCCGAGTGGCAGCGGGGCAGATGAACGCTTGCCTAGGCTTGAGCAGGAGTGTGCTGGGCCCAC
GGGACTGTGCACCACTGCCTGTGGCCAGGGCTCCGGCCTCAGCAGCAGGCTGCAGAAGGAGCTGTGTCTC
TCCCGGGAGGAACTGGACTCGTCTGAAATGCACGTTTCTGAGGCTCAGGAAGCCTTCCCACCTTTGCCTG
CCCTGGGTGATCTGGAGACTCTCCACAGCAGCCACAGTGCCCCCACTCTACCTGAAGACACAGCCATTTG
CAGCTGCCTGCACCCTTGCCCTCTTGAGAGGCTCCCTGAGAGTGGAAGGCTAGGACAGCTCGCAGACCTG
CCCCTCACCAATGGCCAAACCCAGGTTCCTGGCACAGACCCTCTCCCCAGCAGCATGCCTGTGGCACTTC
CTCCCCAGCATCCTGTGGGTGTAGAGCCCAGTGTGGAGCCATACGGGAATGGAGCCCAGGAGAGCCACTC
AGCCCTGCCACGCAGTTCCCGCTCACCTGACTCTCCGGGCCCCAGCCCCTCTGCAGACAGAACTGGCTTC
AAGCCATCCCCATCTGGACGCCACGCAGGGCTCGTGCCCATGAACCTCTACACCCACAGTGTGAACGGAC
TGGTGCTGTCCCTGCTGGCCGAAGAGACTCTTCTCAGCGACACTGCAGCCATCGAGGAGGTGTACCACAG
CAGCCTGGCGTCGCTGAATGGGCTGGAAGTCCACCTGAAGGAGACGCTGCCCAGAGACGAGGCTAGCCTC
ACCAGCAGCACATACAACTTCCTTCATTATGACCGCATCCAGAGCGTGCTCTCAGCCAACCTGCCCCTAG
TGACTGCTCCCCAGGACCGCCGGTTTCTGCAGGCCGTCAACCTCATGCACTCCGACTTTGCCCTGCTGCC
TATGCTGTACGAGATGACCATCAGGAACGCCTCCACAGCCGTGTACGCCTGCAGCAGCCCAGCCCAGGAG
ACCTACTTCCAGCAGCTGGCACCCACTGCCCGCAGCTCTGGCTTCCCAAACCCTCAGGATTGCGCCTTCA
GCCTCGCAGGCAAAGCCAAGCAGAAGCTGCTGAAGCACGGGGTAAACCTGCTGTGA

Translation (671 aa):
MATTTPPETKSAAWWNYFFLYDGSKVKGEGDPTRAGICYFYPPQTLLDQQELLCGQLAGVVRCLWDLSGT
PPMLIRMRNLKFAIRADGDYLWALGCGVEISDASCRQFLDQLIGFFHFYMGPVSLAYKSHPQEELSLQWD
TSITQVLRSTSESHRIFNALWNLDRTKVEPLLLLKAALILQTCQRSPHVLAGCILYKGLIVNSQLLPSLT
AKVLLHQTVPADQRLPGAGAAPQETGAALPPDVQITSVFLSEEEVASLHEFPVEHETRLQGSSVQYPPWD
QSSPTQAEDAWASAAIPEPTPHDGACPSGSGADERLPRLEQECAGPTGLCTTACGQGSGLSSRLQKELCL
SREELDSSEMHVSEAQEAFPPLPALGDLETLHSSHSAPTLPEDTAICSCLHPCPLERLPESGRLGQLADL
PLTNGQTQVPGTDPLPSSMPVALPPQHPVGVEPSVEPYGNGAQESHSALPRSSRSPDSPGPSPSADRTGF
KPSPSGRHAGLVPMNLYTHSVNGLVLSLLAEETLLSDTAAIEEVYHSSLASLNGLEVHLKETLPRDEASL
TSSTYNFLHYDRIQSVLSANLPLVTAPQDRRFLQAVNLMHSDFALLPMLYEMTIRNASTAVYACSSPAQE
TYFQQLAPTARSSGFPNPQDCAFSLAGKAKQKLLKHGVNLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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