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Report for CCDS36302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36302.1 Public Mus musculus 11 Casc3 23 108 98 CCDS HistoryNCBI Gene:192160Re-query CCDS DB by CCDS ID:36302.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36302.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017384.13 ENSMUSP00000017384.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017384.13Link to Ensembl Protein Viewer:ENSMUSP00000017384.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000017384Re-query CCDS DB by Protein ID:ENSMUSP00000017384
Original member Current member EBI ENSMUST00000169695.1 ENSMUSP00000130926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169695.1Link to Ensembl Protein Viewer:ENSMUSP00000130926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169695Re-query CCDS DB by Protein ID:ENSMUSP00000130926
Original member Current member NCBI NM_138660.2 NP_619601.2 Accepted alive Link to Nucleotide Sequence:NM_138660.2Link to Protein Sequence:NP_619601.2Re-query CCDS DB by Nucleotide ID:NM_138660Re-query CCDS DB by Protein ID:NP_619601Link to BLAST:NP_619601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619601.2 698 Q8K3W3 698 100% 0 0

Chromosomal Locations for CCDS 36302.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98809864 98810091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98810459 98810486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98810898 98810935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98821431 98821583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98821660 98821811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98822361 98822537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98822720 98823399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98827572 98827636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98828555 98828669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98828860 98828958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98829214 98829428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98831288 98831410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98831543 98831566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2097 nt):
ATGGCGGACCGGCGGCGGCAGCGCGCTTCCCAGGACACGGAGGACGAGGAATCCGGGGCTTCGGGTTCCG
ACAGCGGCTCTCCGGCGCGGGGCGGCGGCAGCTGCAGCGGGAGCGTCGGAGGCGGCGGCAGTGGCTCGCT
GCCTTCTCAGCGCGGCGGCCGCGGCGGGGGCCTTCACCTGCGGCGGGTGGAGAGCGGGGGCGCCAAGAGC
GCCGAGGAGTCTGAGTGTGAGAGTGAAGATGGCATGGAAGGAGATGCTGTTCTTTCCGATTATGAAAGTG
CAGAAGATTCAGAAGGTGAAGAAGACTACAGTGAAGAGGAGAATTCCAAGGTGGAGCTGAAATCAGAAGC
TAACGATGCTGCTGATTCCTCTGCGAAAGAAAAGGGAGAGGAAAAGCCTGAGTCTAAAGGCACGGTGACT
GGGGAGAGGCAGAGCGGCGATGGGCAGGAGAGCACAGAGCCTGTGGAGAACAAAGTGGGGAAAAAAGGCC
CTAAGCACTTGGATGACGATGAGGATCGGAAAAACCCAGCCTACATCCCCAGGAAAGGGCTCTTCTTTGA
GCACGATCTTCGAGGACAGACTCAGGAGGAGGAAGTCCGACCCAAGGGACGGCAGCGAAAGCTATGGAAA
GATGAGGGTCGCTGGGAACATGATAAGTTCCGTGAGGATGAACAGGCCCCGAAATCTCGGCAGGAGCTAA
TTGCACTTTATGGTTATGACATTCGGTCTGCTCACAATCCTGATGACATCAAACCCCGAAGAATCCGGAA
ACCTCGATTTGGAAGTTCCCCACAAAGAGATCCAAACTGGATTGGTGATCGATCAAGCAAATCCCATCGC
CACCAGGGTCCTGGGGGCAATCTACCACCTAGGACATTTATTAACAGGAACACGGCAGGTACTGGCCGCA
TGTCTGCATCCAGGAATTACTCTCGATCTGGGGGCTTCAAGGATGGCCGCACTAGTTTCAGGCCTGTGGA
GGTTGCTGGGCAGCATGGTGGCCGGTCTGCTGAGACTCTTAAGCATGAAGCTAGTTACCGGTCACGGCGT
CTAGAGCAGACTCCTGTGAGGGATCCATCTCCAGAGCCAGATGCTCCATTGCTTGGAAGTCCTGAGAAAG
AAGAGGTGGCCTCAGAGACGCCAGCTGCTGTACCCGACATCACCCCACCAGCTCCTGACAGGCCCATTGA
GAAGAAGTCCTATTCCCGGGCAAGAAGGACCAGGACCAAAGTTGGGGATGCAGTCAAAGCTGCTGAGGAG
GTTCCTCCTCCATCTGAAGGGCTGGCCTCAACAGCCACAGTCCCCGAAACGACTCCAGCTGCTAAGACTG
GGAACTGGGAGGCTCCAGTAGACTCTACCACAGGTGGACTTGAGCAAGATGTGGCGCAGCTAAATATAGC
AGAACAAAGTTGGAGTCCAAGCCAGCCTTCATTCTTGCAGCCACGGGAACTTCGAGGTGTGCCTAACCAC
ATCCACATGGGAGCAGGACCCCCACCTCAGTTTAACCGGATGGAAGAAATGGGCGTCCAGAGTGGTCGAG
CTAAGCGTTACTCATCCCAGCGGCAGAGACCTGTGCCAGAGCCCCCTGCTCCTCCTGTGCATATCAGTAT
CATGGAGGGACATTACTATGATCCATTGCAGTTCCAGGGACCAATCTATACCCATGGTGACAGCCCTGCC
CCACTGCCCCCACAGGGCATGATCGTACAGCCGGAAATGCACCTTCCCCACCCAGGTTTACATCCCCACC
AGTCACCAGGACCTCTGCCCAACCCGGGTCTCTACCCACCACCAGTGTCCATGTCCCCAGGACAGCCACC
GCCCCAGCAACTGCTTGCTCCTACCTACTTTTCTGCTCCGGGTGTCATGAATTTTGGTAACCCCAATTAC
CCTTATGCTCCGGGAGCATTGCCACCTCCTCCACCTCCTCATCTGTATCCTAACACGCAGGCTCCACCAC
AGGTGTATGGAGGAGTGACTTACTATAACCCCGCCCAGCAGCAGGTGCAGCCCAAGCCCTCCCCACCCCG
GAGGACTCCCCAGCCGGTCTCCATCAAGCCCCCCCCACCTGAGGTTGTAAGCAGGGGTTCCAGTTAA

Translation (698 aa):
MADRRRQRASQDTEDEESGASGSDSGSPARGGGSCSGSVGGGGSGSLPSQRGGRGGGLHLRRVESGGAKS
AEESECESEDGMEGDAVLSDYESAEDSEGEEDYSEEENSKVELKSEANDAADSSAKEKGEEKPESKGTVT
GERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWK
DEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKPRFGSSPQRDPNWIGDRSSKSHR
HQGPGGNLPPRTFINRNTAGTGRMSASRNYSRSGGFKDGRTSFRPVEVAGQHGGRSAETLKHEASYRSRR
LEQTPVRDPSPEPDAPLLGSPEKEEVASETPAAVPDITPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEE
VPPPSEGLASTATVPETTPAAKTGNWEAPVDSTTGGLEQDVAQLNIAEQSWSPSQPSFLQPRELRGVPNH
IHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHGDSPA
PLPPQGMIVQPEMHLPHPGLHPHQSPGPLPNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPNY
PYAPGALPPPPPPHLYPNTQAPPQVYGGVTYYNPAQQQVQPKPSPPRRTPQPVSIKPPPPEVVSRGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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