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Report for CCDS40645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40645.1 Public Mus musculus 9 Pstpip1 23 108 98 CCDS HistoryNCBI Gene:19200Re-query CCDS DB by CCDS ID:40645.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40645.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059206.7 ENSMUSP00000055823.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059206.7Link to Ensembl Protein Viewer:ENSMUSP00000055823.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059206Re-query CCDS DB by Protein ID:ENSMUSP00000055823
Original member Current member NCBI NM_011193.3 NP_035323.2 Accepted alive Link to Nucleotide Sequence:NM_011193.3Link to Protein Sequence:NP_035323.2Re-query CCDS DB by Nucleotide ID:NM_011193Re-query CCDS DB by Protein ID:NP_035323Link to BLAST:NP_035323.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035323.2 415 P97814 415 99.759% 0 1

Chromosomal Locations for CCDS 40645.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56090409 56090444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56114230 56114330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56115063 56115137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56120301 56120335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56120547 56120653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56122759 56122821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56123262 56123360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56123748 56123793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56124594 56124673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56125124 56125222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56125927 56126023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56126582 56126672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56127485 56127537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56127727 56127860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56128589 56128720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGATGGCCCAGCTGCAGTTCCGAGATGCCTTCTGGTGCAGGGACTTCACGGCCCACACAGGGTATGAGG
TGCTACTGCAGAGGCTGCTGGACGGCAGGAAGATGTGCAAGGATGTGGAGGAGCTGCTCAGACAGAGGGC
CCAGGCGGAGGAGAGGTACGGGAAGGAGCTGGTGCAGATTGCACGCAAGGCTGGTGGCCAGACAGAGATG
AATTCCCTGAGGACCTCCTTTGACTCCCTGAAGCAGCAAACAGAGAATGTGGGCAGTGCACACATCCAGC
TGGCCCTGGCCCTGCGTGAGGAGCTGCGGAGCCTGGAGGAGTTCCGAGAGAGACAGAAAGAGCAGCGGAA
GAAGTATGAGGCCATCATGGACCGTGTCCAGAAGAGCAAGTTGTCGCTCTACAAGAAGACCATGGAGTCC
AAGAAGGCATATGACCAGAAGTGCAGGGATGCAGATGATGCTGAGCAGGCCTTCGAGCGTGTGAGTGCCA
ATGGCCACCAGAAGCAAGTAGAAAAGAGCCAGAACAAAGCCAAGCAGTGCAAGGAGTCAGCCACAGAGGC
AGAAAGAGTGTACAGGCAAAATATCGAACAACTGGAGAGAGCGAGGACCGAGTGGGAGCAGGAGCACCGG
ACTACCTGTGAGGCCTTCCAGTTGCAGGAGTTTGACCGGCTCACCATCCTCCGCAATGCCCTGTGGGTGC
ACTGTAACCAGCTCTCCATGCAGTGTGTCAAGGATGATGAGCTCTATGAGGAAGTGCGGCTGACCCTTGA
GGGCTGTGATGTGGAAGGTGACATCAATGGCTTCATCCAGTCCAAGAGCACTGGCAGAGAGCCCCCAGCT
CCGGTGCCTTATCAGAACTACTATGACAGGGAGGTGACCCCACTGATTGGCAGCCCTAGCGTCCAGCCCT
CCTGTGGTGTGATAAAGAGGTTCTCTGGGCTGCTACATGGAAGTCCCAAGACCACACCTTCTGCTCCTGC
TGCTTCCACAGAGACTCTGACTCCCACCCCTGAGCGGAATGAGTTGGTCTACGCATCCATCGAAGTGCAG
GCGACCCAGGGAAACCTTAACTCATCAGCCCAGGACTACCGGGCACTCTACGACTACACCGCACAGAATT
CTGATGAGCTGGACATTTCCGCGGGAGACATCCTGGCGGTCATCCTGGAAGGGGAGGATGGCTGGTGGAC
TGTGGAGCGGAACGGACAACGTGGCTTTGTCCCTGGGTCGTACTTGGAGAAGCTCTGA

Translation (415 aa):
MMAQLQFRDAFWCRDFTAHTGYEVLLQRLLDGRKMCKDVEELLRQRAQAEERYGKELVQIARKAGGQTEM
NSLRTSFDSLKQQTENVGSAHIQLALALREELRSLEEFRERQKEQRKKYEAIMDRVQKSKLSLYKKTMES
KKAYDQKCRDADDAEQAFERVSANGHQKQVEKSQNKAKQCKESATEAERVYRQNIEQLERARTEWEQEHR
TTCEAFQLQEFDRLTILRNALWVHCNQLSMQCVKDDELYEEVRLTLEGCDVEGDINGFIQSKSTGREPPA
PVPYQNYYDREVTPLIGSPSVQPSCGVIKRFSGLLHGSPKTTPSAPAASTETLTPTPERNELVYASIEVQ
ATQGNLNSSAQDYRALYDYTAQNSDELDISAGDILAVILEGEDGWWTVERNGQRGFVPGSYLEKL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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