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Report for CCDS28980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28980.1 Public Mus musculus 17 Eif2ak2 23 108 98 CCDS HistoryNCBI Gene:19106Re-query CCDS DB by CCDS ID:28980.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024884.4 ENSMUSP00000024884.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024884.4Link to Ensembl Protein Viewer:ENSMUSP00000024884.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024884Re-query CCDS DB by Protein ID:ENSMUSP00000024884
Original member Current member NCBI NM_011163.4 NP_035293.1 Accepted alive Link to Nucleotide Sequence:NM_011163.4Link to Protein Sequence:NP_035293.1Re-query CCDS DB by Nucleotide ID:NM_011163Re-query CCDS DB by Protein ID:NP_035293Link to BLAST:NP_035293.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035293.1 515 Q03963 515 100% 0 0

Chromosomal Locations for CCDS 28980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78855139 78855261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78855343 78855399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78856567 78856668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78858501 78858632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78863839 78864019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78865302 78865421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78866315 78866437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78868757 78868807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78869476 78869510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78870487 78870535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78870654 78870733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78871149 78871269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78873943 78874079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78876182 78876302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78878142 78878257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCCAGTGATACCCCAGGTTTCTACATGGACAAACTTAATAAATACCGCCAGATGCACGGAGTAGCCA
TTACGTATAAAGAACTTAGTACTTCGGGACCTCCACATGACAGAAGGTTTACATTTCAAGTTTTAATAGA
TGAGAAGGAATTTCCAGAAGCCAAAGGTAGATCAAAGCAGGAGGCAAGAAACGCTGCAGCCAAATTAGCT
GTTGATATACTTGATAACGAAAACAAGGTGGATTGTCACACGAGTGCATCTGAGCAAGGCTTGTTCGTTG
GTAACTACATAGGCCTTGTCAATAGCTTTGCCCAGAAGAAAAAGCTGTCTGTAAATTATGAACAGTGTGA
GCCCAACTCTGAGTTGCCTCAAAGATTTATTTGTAAATGCAAAATTGGGCAGACAATGTATGGTACTGGT
TCAGGTGTCACCAAACAGGAGGCAAAGCAGTTGGCTGCGAAAGAAGCCTATCAGAAGCTGTTAAAGAGCC
CGCCGAAAACTGCCGGAACATCCTCTAGCGTTGTCACATCTACATTCAGTGGCTTTTCCAGCAGCTCGTC
TATGACAAGTAATGGTGTTTCCCAGTCAGCACCTGGAAGTTTTTCCTCAGAGAACGTGTTTACGAACGGT
CTCGGAGAAAATAAAAGGAAATCAGGAGTAAAAGTATCCCCTGATGATGTGCAAAGAAATAAATATACCT
TGGACGCCAGGTTTAACAGCGATTTTGAAGACATAGAAGAAATTGGCTTAGGTGGATTTGGTCAAGTTTT
CAAAGCGAAACACAGAATTGATGGAAAGAGATACGCTATTAAGCGCGTTAAATATAACACGGAGAAGGCG
GAGCACGAAGTACAAGCGCTGGCAGAACTCAATCACGTCAACATTGTCCAATACCATAGTTGTTGGGAGG
GAGTTGACTATGATCCTGAGCACAGCATGAGTGATACAAGTCGATACAAAACCCGGTGCCTCTTTATTCA
AATGGAATTCTGTGATAAAGGAACTTTGGAGCAATGGATGAGAAACAGAAATCAGAGTAAAGTGGACAAA
GCTTTGATTTTGGACTTATATGAACAAATCGTGACCGGAGTGGAGTATATACACTCGAAAGGGTTAATTC
ACAGAGATCTTAAGCCAGGTAATATATTTTTAGTAGATGAAAGACACATTAAGATCGGAGACTTTGGCCT
TGCAACAGCCCTGGAAAATGATGGAAAATCCCGAACAAGGAGAACAGGAACTCTTCAATACATGAGTCCA
GAACAGTTATTTTTAAAGCACTATGGAAAAGAAGTGGACATCTTTGCTTTGGGCCTTATTCTAGCTGAAC
TTCTTCACACGTGCTTCACGGAGTCAGAGAAAATAAAGTTTTTCGAAAGTCTAAGAAAAGGCGACTTCTC
TAATGATATATTCGACAACAAAGAAAAAAGCCTTCTAAAAAAACTACTCTCAGAGAAACCCAAGGACCGA
CCTGAGACATCTGAAATCCTGAAGACCTTGGCTGAATGGAGGAACATCTCAGAGAAAAAGAAAAGAAACA
CATGTTAG

Translation (515 aa):
MASDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLA
VDILDNENKVDCHTSASEQGLFVGNYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTG
SGVTKQEAKQLAAKEAYQKLLKSPPKTAGTSSSVVTSTFSGFSSSSSMTSNGVSQSAPGSFSSENVFTNG
LGENKRKSGVKVSPDDVQRNKYTLDARFNSDFEDIEEIGLGGFGQVFKAKHRIDGKRYAIKRVKYNTEKA
EHEVQALAELNHVNIVQYHSCWEGVDYDPEHSMSDTSRYKTRCLFIQMEFCDKGTLEQWMRNRNQSKVDK
ALILDLYEQIVTGVEYIHSKGLIHRDLKPGNIFLVDERHIKIGDFGLATALENDGKSRTRRTGTLQYMSP
EQLFLKHYGKEVDIFALGLILAELLHTCFTESEKIKFFESLRKGDFSNDIFDNKEKSLLKKLLSEKPKDR
PETSEILKTLAEWRNISEKKKRNTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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