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Report for CCDS20859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20859.1 Public Mus musculus 7 Ppp5c 23 108 98 CCDS HistoryNCBI Gene:19060Re-query CCDS DB by CCDS ID:20859.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003183.11 ENSMUSP00000003183.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003183.11Link to Ensembl Protein Viewer:ENSMUSP00000003183.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000003183Re-query CCDS DB by Protein ID:ENSMUSP00000003183
Original member NCBI NM_011155.2 NP_035285.2 Updated not alive Link to Nucleotide Sequence:NM_011155.2Link to Protein Sequence:NP_035285.2Re-query CCDS DB by Nucleotide ID:NM_011155Re-query CCDS DB by Protein ID:NP_035285
Current member NCBI NM_011155.3 NP_035285.2 Accepted alive Link to Nucleotide Sequence:NM_011155.3Link to Protein Sequence:NP_035285.2Re-query CCDS DB by Nucleotide ID:NM_011155Re-query CCDS DB by Protein ID:NP_035285Link to BLAST:NP_035285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035285.2 499 Q60676 499 100% 0 0

Chromosomal Locations for CCDS 20859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 17005109 17005171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17005261 17005342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17006060 17006238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17006332 17006372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17006907 17006994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17007104 17007246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17007726 17007831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17008614 17008712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17008993 17009058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17009875 17009996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17015398 17015545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17022415 17022656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17027693 17027813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGCGATGGCGGAGGGCGAGCGGACTGAGTGTGCTGAGACCCCCCGGGACGAACCCCCGGCCGATGGCA
CTCTGAAGCGGGCAGAGGAGCTCAAGACACAGGCCAACGACTACTTCAAAGCCAAGGACTACGAGAACGC
GATCAAGTTCTACAGTCAGGCCATCGAGTTGAACCCCGGCAATGCCATCTACTATGGCAACCGCAGCCTG
GCCTACCTGCGCACTGAGTGCTATGGCTATGCACTGGGCGACGCCACACGGGCCATCGAGCTTGACAAGA
AGTACATCAAAGGCTACTACCGCCGGGCGGCCAGCAACATGGCACTGGGCAAGTTCCGGGCTGCCCTGCG
TGACTACGAGACGGTGGTGAAAGTGAAGCCTAATGACAAGGATGCCAAGATGAAGTACCAGGAGTGCAGC
AAGATTGTGAAGCAGAAGGCCTTTGAGAGGGCCATTGCGGGTGACGAGCACAGACGCTCTGTCGTGGACT
CTCTGGACATTGAAAGCATGACCATTGAAGATGAGTACAGCGGGCCCAAGCTTGAGGATGGCAAAGTGAC
AATCACCTTCATGAAAGACCTCATGCAGTGGTACAAGGATCAGAAGAAACTGCACCGGAAGTGCGCCTAC
CAGATCCTAGTACAGGTGAAAGAAGTCCTCTGCAAGCTGAGCACGCTGGTGGAGACGACGCTGAAAGAGA
CAGAGAAGATTACAGTGTGCGGGGACACCCATGGCCAGTTCTACGACCTCCTCAACATATTTGAGCTCAA
CGGTTTACCCTCAGAGACCAACCCCTATATATTTAATGGCGATTTTGTGGACCGTGGTTCCTTCTCCGTT
GAAGTGATCCTCACCCTCTTCGGCTTTAAGCTCCTGTATCCAGATCATTTCCATCTACTTCGAGGCAACC
ACGAGACAGACAACATGAACCAGATCTACGGGTTCGAGGGCGAGGTGAAGGCCAAGTACACAGCCCAGAT
GTATGAGCTCTTCAGCGAGGTGTTCGAGTGGCTTCCGCTGGCGCAGTGTATCAATGGCAAAGTGCTGATC
ATGCACGGAGGCCTATTCAGCGAAGATGGTGTCACTCTGGATGACATCCGAAAGATTGAGCGGAATCGGC
AGCCCCCAGACTCAGGTCCCATGTGTGACCTGCTGTGGTCAGATCCCCAGCCACAGAATGGGCGCTCCGT
CAGCAAGCGTGGTGTGAGTTGCCAGTTTGGGCCTGATGTCACCAAGGCCTTCCTGGAGGAGAATCAACTG
GACTATATCATCCGCAGCCATGAAGTCAAAGCCGAGGGCTACGAGGTGGCCCATGGTGGCCGCTGTGTCA
CTGTCTTTTCTGCCCCCAACTATTGTGACCAGATGGGAAACAAAGCCTCCTACATCCACCTCCAGGGCTC
CGACCTGCGGCCCCAGTTCCACCAATTCACAGCAGTGCCTCACCCCAATGTCAAGCCCATGGCATACGCC
AACACGCTTCTGCAGCTAGGAATGATGTGA

Translation (499 aa):
MAMAEGERTECAETPRDEPPADGTLKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPGNAIYYGNRSL
AYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPNDKDAKMKYQECS
KIVKQKAFERAIAGDEHRRSVVDSLDIESMTIEDEYSGPKLEDGKVTITFMKDLMQWYKDQKKLHRKCAY
QILVQVKEVLCKLSTLVETTLKETEKITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSV
EVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLI
MHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSVSKRGVSCQFGPDVTKAFLEENQL
DYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTAVPHPNVKPMAYA
NTLLQLGMM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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