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Report for CCDS21025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21025.1 Public Mus musculus 7 Pld3 23 108 98 CCDS HistoryNCBI Gene:18807Re-query CCDS DB by CCDS ID:21025.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117611.7 ENSMUSP00000112942.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117611.7Link to Ensembl Protein Viewer:ENSMUSP00000112942.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117611Re-query CCDS DB by Protein ID:ENSMUSP00000112942
Original member Current member EBI ENSMUST00000117095.7 ENSMUSP00000113820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117095.7Link to Ensembl Protein Viewer:ENSMUSP00000113820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117095Re-query CCDS DB by Protein ID:ENSMUSP00000113820
Original member NCBI NM_001317355.1 NP_001304284.1 Updated not alive Link to Nucleotide Sequence:NM_001317355.1Link to Protein Sequence:NP_001304284.1Re-query CCDS DB by Nucleotide ID:NM_001317355Re-query CCDS DB by Protein ID:NP_001304284
Current member NCBI NM_001317355.2 NP_001304284.1 Accepted alive Link to Nucleotide Sequence:NM_001317355.2Link to Protein Sequence:NP_001304284.1Re-query CCDS DB by Nucleotide ID:NM_001317355Re-query CCDS DB by Protein ID:NP_001304284Link to BLAST:NP_001304284.1
Original member NCBI NM_011116.2 NP_035246.1 Updated not alive Link to Nucleotide Sequence:NM_011116.2Link to Protein Sequence:NP_035246.1Re-query CCDS DB by Nucleotide ID:NM_011116Re-query CCDS DB by Protein ID:NP_035246
Current member NCBI NM_011116.3 NP_035246.1 Accepted alive Link to Nucleotide Sequence:NM_011116.3Link to Protein Sequence:NP_035246.1Re-query CCDS DB by Nucleotide ID:NM_011116Re-query CCDS DB by Protein ID:NP_035246Link to BLAST:NP_035246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304284.1 488 O35405 488 100% 0 0
NP_035246.1 488 O35405 488 100% 0 0

Chromosomal Locations for CCDS 21025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27532298 27532485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27532575 27532674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27533646 27533811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27535789 27535928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27537580 27537780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27539350 27539477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27539555 27539669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27541085 27541268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27541686 27541828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27541914 27541988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27542089 27542115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGAAGCCCAAACTGATGTACCAGGAGCTGAAGGTGCCTGTTGAGGAGCCTGCGGGAGAACTGCCCTTGA
ATGAAATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGCTGGGTCCTCCTGGTCCTGATCCTGGCGGT
AGTGGGCTTCGGTGCCCTGATGACTCAGCTGTTTCTATGGGAATACGGGGACTTACATCTATTTGGACCA
AATCAGCGCCCAGCCCCCTGCTATGACCCCTGCGAGGCGGTGCTGGTGGAGAGCATTCCTGAGGGTCTGG
AGTTTCCCAATGCCACCACGAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCTCCTTGCCGGTGCTCA
CAGCAGCCTGGACATCGCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCT
GCCCAGCAGGGTGAAGAGGTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCG
CTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTGGTGCCCAGGTCCGCAT
GGTGGACATGCAGAAGCTGACTCATGGTGTCCTGCACACCAAGTTCTGGGTGGTGGATCAGACCCACTTC
TACCTGGGCAGTGCCAACATGGACTGGCGGTCGCTGACCCAGGTCAAGGAGCTGGGCGTGGTCATGTACA
ACTGCAGCTGCCTCGCCCGGGACCTCACCAAGATCTTTGAAGCCTATTGGTTCCTGGGCCAGGCAGGTAG
CTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGC
CTCAATGGCACCCCAGCTCTGGCCTACCTAGCGAGTGCACCCCCACCACTGTGTCCAAGTGGCCGCACCC
CAGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTGCCCGAAGCTTCATCTACATTGCGGTTATGAACTA
CCTGCCCACCATGGAGTTCTCTCATCCACGCAGGTTCTGGCCAGCGATCGATGATGGGCTGAGACGGGCT
GCGTATGAACGAGGCGTCAAAGTGCGCCTGCTCATCAGCTGCTGGGGACACTCTGATCCATCGATGCGGT
CCTTCCTGCTCTCCCTGGCTGCACTTCATGACAACCATACTCACTCCGACATCCAGGTGAAACTGTTTGT
GGTCCCTACGGATGAGTCCCAGGCCCGAATCCCCTATGCCCGTGTCAACCACAACAAGTACATGGTGACT
GAACGTGCCTCATACATTGGAACCTCCAACTGGTCTGGAAGCTACTTCACGGAGACAGCAGGCACCTCCC
TGCTGGTGACACAGAACGGGCATGGTGGCTTGCGCAGTCAGCTGGAGGCTGTTTTCCTGAGAGACTGGGA
ATCCCCATACAGCCACGATCTCGACACCTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGCTTTGA

Translation (488 aa):
MKPKLMYQELKVPVEEPAGELPLNEIEAWKAAEKKARWVLLVLILAVVGFGALMTQLFLWEYGDLHLFGP
NQRPAPCYDPCEAVLVESIPEGLEFPNATTSNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPS
AQQGEEVLQQLQALAPRGVKVRIAVSKPNGPLADLQSLLQSGAQVRMVDMQKLTHGVLHTKFWVVDQTHF
YLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRSFDTRYNQETPMEIC
LNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDSARSFIYIAVMNYLPTMEFSHPRRFWPAIDDGLRRA
AYERGVKVRLLISCWGHSDPSMRSFLLSLAALHDNHTHSDIQVKLFVVPTDESQARIPYARVNHNKYMVT
ERASYIGTSNWSGSYFTETAGTSLLVTQNGHGGLRSQLEAVFLRDWESPYSHDLDTSANSVGNACRLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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