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Report for CCDS26496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26496.1 Public Mus musculus 13 Phf2 23 108 98 CCDS HistoryNCBI Gene:18676Re-query CCDS DB by CCDS ID:26496.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035540.8 ENSMUSP00000047308.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035540.8Link to Ensembl Protein Viewer:ENSMUSP00000047308.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035540Re-query CCDS DB by Protein ID:ENSMUSP00000047308
Original member Current member NCBI NM_011078.3 NP_035208.2 Accepted alive Link to Nucleotide Sequence:NM_011078.3Link to Protein Sequence:NP_035208.2Re-query CCDS DB by Nucleotide ID:NM_011078Re-query CCDS DB by Protein ID:NP_035208Link to BLAST:NP_035208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035208.2 1096 Q9WTU0 1096 100% 0 0

Chromosomal Locations for CCDS 26496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 48803599 48803687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48804335 48804722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48805231 48805340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48805825 48805920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48807605 48807876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48812909 48813069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48813703 48813773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48813866 48814044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48815955 48816070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48816435 48816554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48817506 48817865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48818302 48818391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48819540 48819631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48820041 48820147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48820526 48820613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48821531 48821693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48822949 48823135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48826052 48826193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48828786 48828946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48832004 48832118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48835210 48835295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 48870668 48870765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3291 nt):
ATGGCGACGGTGCCCGTGTACTGCGTCTGCCGGCTGCCCTACGACGTTACCCGCTTTATGATCGAGTGCG
ATGCCTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGGGTGGAAGAGGAAGAGGCACCAGACATCGACAT
TTACCACTGCCCGAACTGCGAGAAAACCCATGGCAAGTCCACACTCAAGAAAAAGCGGACTTGGCACAAA
CACGGCCCTGGGCCAACACCGGACGTGAAACCAGTGCAGAATGGCAGTCAGCTGTTCATCAAGGAGCTGC
GGAGCCGAACCTTCCCCAGTGCTGAAGACGTGGTGTCCCGTGTGCCAGGTAGCCAGCTCACCGTGGGCTA
CATGGAGGAGCATGGCTTCACTGAGCCCATCCTTGTCCCCAAGAAAGATGGCCTGGGCTTAGCTGTCCCT
GCCCCAACATTCTACGTGAGTGATGTGGAGAACTATGTGGGGCCGGAGAGGAGTGTGGATGTGACAGACG
TTACCAAACAGAAAGACTGCAAAATGAAGCTGAAAGAATTCGTGGACTATTACTATAGCACGAACCGCAA
GCGTGTTCTCAACGTGACCAACCTCGAGTTCTCAGACACCAGAATGTCCAGCTTTGTGGAGCCACCTGAC
ATTGTGAAGAAACTATCGTGGGTGGAAAACTACTGGCCCGATGACGCGCTGCTGGCCAAGCCCAAGGTGA
CCAAGTACTGCCTGATCTGTGTGAAGGACAGCTACACCGACTTCCACATTGACTCTGGAGGTGCCTCAGC
GTGGTACCATGTCCTCAAGGGGGAGAAGATCTTCTATCTCATCCGGCCAGCCTCAGCCAACATCTCCCTA
TATGAGCGCTGGCGGTCAGCCTCCAACCACAGCGAGATGTTCTTCGCCGACCAGGTGGACAGGTGCTATA
AATGCACTGTCAAGCAGGGCCAGACCCTCTTCATCCCCTCAGGCTGGATCTATGCCACACTCACCCCCGT
GGACTGCCTGGCCTTCGCTGGACATTTCCTCCACAGCCTCAGTGTGGAGATGCAGATGAGGGCATACGAG
GTGGAAAGGAGGTTAAAACTTGGCAGCCTGACTCAGTTTCCCAACTTTGAAACTGCCTGCTGGTACATGG
GAAAGCACCTATTGGAAGCGTTCAAAGGTTCTCACAAGTCTGGGAAACAGCTGCCCCCACACTTAGTTCA
AGGAGCTAAAATTCTCAATGGTGCTTTTAGGTCATGGACGAAGAAGCAGGCTTTGGCAGAGCATGAGGAC
GAACTCCCAGAGCACTTCAGGCCCTCACAGCTCATCAAGGACCTGGCCAAAGAGATCAGGCTCAGTGAGA
ATGCCTCCAAAACTGTCCGACCTGAAGTAAACGCTGCCGCCTCCTCAGATGAGGTCTGTGATGGAGACCG
GGAGAAGGAAGAACCGCCATCTCCTGTTGAGACTACCCCACCTCGATCCCTCCTGGAGAAAGTGTCCAAA
AAAAAGACTTCCAAGACTGTGAAGATGCCCAAGCCATCCAAAATTCCCAAGCCCCCCAAATCCCCCAAGC
CCCCCAAAACTCTGAAGCTCAAAGATGGGAGCAAGAAGAAAGGGAAGAAGTGCAAGGAGTCAGCCTCACC
CACCATCCCCAACCTAGACCTGCTTGAGGCTCACACAAAGGAGGCGCTGACCAAGATGGAGCCACCGAAG
AAAGGGAAGACCCCAAAGAGCGTCCTGAGTGTTCCCAATAAGGACACAGTCCACACGCAGAATGACATGG
AAAGGCTGGAAATTCGAGAGCAAACAAAGAGCAAGTCAGAAGCCAAGTGGAAATACAAGAACAGCAAACC
TGACTCGTTACTGAAGATGGAGGAGGAGCAGAGGCTGGAGAAGTCGCCCCTGGCTGGGAACAAGGACAAG
TTTTCCTTTTCTTTCTCCAACAGAAAACTCCTGGGCTCCAAGGCCCTCAGGCCCCCGAGCAGCCCTGGTG
TGTTCGGCGCCTTGCAGAGCTTCAAGGAGGACAAGGCCAAGCCCGTGCGCGATGAGTATGAGTACGTATC
AGATGATGGGGAGCTGAAGATAGACGAGTTTCCCATCAGGAGGAAGAAGAGCGCCCCCAAAAGGGACTTG
TCCTTCTTGTTAGACAAGAAGGAGGCTCTCCTCATGCCCACCTCGAAGCCAAAGCTGGATTCTGCGGTGT
ACAAGAGCGATGACTCCTCTGACGAGGGCTCTCTGCACATCGACACGGACACCAAGCCAGGCAGAAATGC
CAAAGTGAAGAAGGAGAGTGGGAGCTCCGCGGCCGGCATCCTGGACCTGCTGCAGGCCAGCGAGGAGGTT
GGCGCACTCGAGTACAACCCCAACAGCCAGCCCCCTGCCTCCCCCAGCACACAGGAAGCCATTCAGGGAA
TGCTCTCCATGGCCAATCTGCAGGCCTCTGACTCTTGCCTGCAGACCACATGGGGCACGGGGCAGGCCAA
GGGTGGCTCACTGGCAGCCCATGGTGCCCGGAAGATTGGTGGTGGCAACAAAGGCACAGGCAAGCGCCTG
CTGAAGAGGACTGCCAAGAACAGTGTGGATCTGGAGGACTACGAGGAGCAGGATCACCTGGATGCCTGCT
TCAAGGACTCAGACTATGTTTACCCCTCACTGGAGTCTGACGAAGATAACCCCGTCTTCAAGTCCCGGTC
AAAGAAGAGGAAAGGCTCAGACGATGCTCCGTACAGCCCCACAGCCAGGGTCGGTCCATCGGTGCCAAGA
CAAGACAGGCCTGTGCGTGAGGGGACCAGAGTGGCCTCCATTGAGACGGGGCTGGCAGCTGCTGCAGCCA
AGCTGTCCCAGCAGGAGGAGCAGAAAAACAGGAAGAAGAAGAACACCAAAAGGAAGCCGGCTCCTAACAC
TGCCTCCCCCTCCATCTCCACCTCTGCCTCCGCCTCCACGGGTACCACCTCGGCCTCCACCACCCCAGCA
TCCACCACCCCGGCCTCCACCACCCCAGCATCCACCACCCCGGCCTCCACCAGCACAGCCAGCAGCCAGG
CCTCACAGGAGGGCAGCTCACCTGAGCCCCCACCTGAATCACACAGCAGTAGCCTGGCTGACCACGAATA
TACAGCAGCCGGCACATTCTCGGGGTCCCAGGCTGGCCGTGCCTCCCAGCCCATGGCCCCTGGAGTCTTT
CTCACACAGAGGCGGCCTTCTGCATCATCCCCCAACAACACTGCTGCCAAAGGAAAACGTACAAAAAAGG
GCATGGCCACCGCCAAGCAAAGGCTTGGAAAGATCTTGAAGATCCATCGGAACGGGAAACTGCTCCTCTA
A

Translation (1096 aa):
MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHK
HGPGPTPDVKPVQNGSQLFIKELRSRTFPSAEDVVSRVPGSQLTVGYMEEHGFTEPILVPKKDGLGLAVP
APTFYVSDVENYVGPERSVDVTDVTKQKDCKMKLKEFVDYYYSTNRKRVLNVTNLEFSDTRMSSFVEPPD
IVKKLSWVENYWPDDALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKIFYLIRPASANISL
YERWRSASNHSEMFFADQVDRCYKCTVKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYE
VERRLKLGSLTQFPNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAFRSWTKKQALAEHED
ELPEHFRPSQLIKDLAKEIRLSENASKTVRPEVNAAASSDEVCDGDREKEEPPSPVETTPPRSLLEKVSK
KKTSKTVKMPKPSKIPKPPKSPKPPKTLKLKDGSKKKGKKCKESASPTIPNLDLLEAHTKEALTKMEPPK
KGKTPKSVLSVPNKDTVHTQNDMERLEIREQTKSKSEAKWKYKNSKPDSLLKMEEEQRLEKSPLAGNKDK
FSFSFSNRKLLGSKALRPPSSPGVFGALQSFKEDKAKPVRDEYEYVSDDGELKIDEFPIRRKKSAPKRDL
SFLLDKKEALLMPTSKPKLDSAVYKSDDSSDEGSLHIDTDTKPGRNAKVKKESGSSAAGILDLLQASEEV
GALEYNPNSQPPASPSTQEAIQGMLSMANLQASDSCLQTTWGTGQAKGGSLAAHGARKIGGGNKGTGKRL
LKRTAKNSVDLEDYEEQDHLDACFKDSDYVYPSLESDEDNPVFKSRSKKRKGSDDAPYSPTARVGPSVPR
QDRPVREGTRVASIETGLAAAAAKLSQQEEQKNRKKKNTKRKPAPNTASPSISTSASASTGTTSASTTPA
STTPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSLADHEYTAAGTFSGSQAGRASQPMAPGVF
LTQRRPSASSPNNTAAKGKRTKKGMATAKQRLGKILKIHRNGKLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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