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Report for CCDS16444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16444.1 Public Mus musculus 2 Pex16 23 108 98 CCDS HistoryNCBI Gene:18633Re-query CCDS DB by CCDS ID:16444.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028650.8 ENSMUSP00000028650.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028650.8Link to Ensembl Protein Viewer:ENSMUSP00000028650.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028650Re-query CCDS DB by Protein ID:ENSMUSP00000028650
Original member NCBI NM_145122.2 NP_660104.2 Updated not alive Link to Nucleotide Sequence:NM_145122.2Link to Protein Sequence:NP_660104.2Re-query CCDS DB by Nucleotide ID:NM_145122Re-query CCDS DB by Protein ID:NP_660104
Current member NCBI NM_145122.3 NP_660104.2 Accepted alive Link to Nucleotide Sequence:NM_145122.3Link to Protein Sequence:NP_660104.2Re-query CCDS DB by Nucleotide ID:NM_145122Re-query CCDS DB by Protein ID:NP_660104Link to BLAST:NP_660104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660104.2 336 Q91XC9 336 100% 0 0

Chromosomal Locations for CCDS 16444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 92375564 92375675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92375871 92375906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92376627 92376703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92377430 92377563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92377691 92377791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92378593 92378673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92378796 92378948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92379034 92379106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92379216 92379335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92380410 92380474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 92381036 92381094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGAGAAGCTACGGCTCCTGAGCCTCCGCTACCAGGAGTATGTGACTCGTCATCCAGCCGCCACGGCCC
AGTTGGAGACGGCTGTGCGGGGCCTCAGTTACCTGCTGGCAGGTCGCTTCTCCGATTCACACGAGCTGTC
TGAACTGGTGTACTCTGCCTCGAACCTGCTGGTGCTGCTCAATGACGGGATCCTGAGGAAGGAGCTTCGA
AAAAAGTTGCCTGTGTCGCTGTCCCAGCAGAAGTTGCTGACATGGCTGAGTGTACTGGAGTGTGTGGAGG
TGTTCATGGAGATGGGGGCTGCCAAGGTGTGGGGCGAAGTAGGCCGTTGGCTCGTCATTGCTCTCATCCA
GTTGGCCAAGGCCGTCCTGCGCATGCTCCTGTTGATCTGGTTCAAGGCTGGCATTCAGACATCACCCCCC
ATTGTTCCACTGGACAGGGAAACTCAGGCACAGCCCTTGGATGGTGACCACAATCCGGGCAGCCAGGAGC
CATCATATGTGGGGAAACGGTCACACAGAGTGGTGCGAACCCTCCAGAACAGCCCATCCCTGCACTCACG
GTACTGGGGAGCCCCTCAGCAGCGGGAAATTCGGCAGAAACAGCAGCAGGAGGAACTGAGCACACCCCCA
ACACCTCTGGGGTTGCAGGAGACCATTGCAGAGTCTTTGTACATCGCCCGGCCCCTGCTGCACTTGCTCA
GCCTGGGCTTATGGGGTCAGCGATCGTGGACACCCTGGCTACTGTCTGGTGTGGTAGATATGACTAGCCT
GAGTCTCCTGAGTGACAGGAAGAACTTGACCCGGAGGGAGCGGCTAGAACTGAGGCGTCGCACAATCCTG
CTGCTATACTACCTGCTACGCTCACCGTTCTATGACCGCTTCTCTGAAGCCAAGATCCTCTTCCTGCTCC
AGCTGCTTACAGACCACATCCCTGGCGTGGGTCTGGTGGCAAGGCCGCTCATGGACTACTTGCCCTCCTG
GCAGAAAATCTATTTCTACAGTTGGGGCTGA

Translation (336 aa):
MEKLRLLSLRYQEYVTRHPAATAQLETAVRGLSYLLAGRFSDSHELSELVYSASNLLVLLNDGILRKELR
KKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLIWFKAGIQTSPP
IVPLDRETQAQPLDGDHNPGSQEPSYVGKRSHRVVRTLQNSPSLHSRYWGAPQQREIRQKQQQEELSTPP
TPLGLQETIAESLYIARPLLHLLSLGLWGQRSWTPWLLSGVVDMTSLSLLSDRKNLTRRERLELRRRTIL
LLYYLLRSPFYDRFSEAKILFLLQLLTDHIPGVGLVARPLMDYLPSWQKIYFYSWG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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