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Report for CCDS39334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39334.1 Public Mus musculus 5 Pcolce 23 108 98 CCDS HistoryNCBI Gene:18542Re-query CCDS DB by CCDS ID:39334.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031731.13 ENSMUSP00000031731.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031731.13Link to Ensembl Protein Viewer:ENSMUSP00000031731.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031731Re-query CCDS DB by Protein ID:ENSMUSP00000031731
Original member Current member NCBI NM_008788.2 NP_032814.2 Accepted alive Link to Nucleotide Sequence:NM_008788.2Link to Protein Sequence:NP_032814.2Re-query CCDS DB by Nucleotide ID:NM_008788Re-query CCDS DB by Protein ID:NP_032814Link to BLAST:NP_032814.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032814.2 468 Q61398 468 100% 0 0

Chromosomal Locations for CCDS 39334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137605163 137605317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137605457 137605627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137605723 137605800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137606827 137607107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137607408 137607544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137607955 137608079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137608891 137609149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137610397 137610505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137611237 137611328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGCTGCCTGCTGCCCTAACCTCCTTTCTGGGGCCATTCCTTTTGGCCTGGGTGCTGCCTCTTGCCCGAG
GCCAGACCCCCAACTACACGAGACCTGTGTTCCTGTGCGGAGGGGACGTGACCGGGGAGTCAGGTTACGT
GGCAAGTGAGGGTTTCCCCAACCTCTACCCCCCAAACAAGAAGTGCATCTGGACAATTACGGTGCCCGAG
GGCCAGACTGTGTCCCTGTCCTTCCGAGTCTTCGATATGGAGCTCCACCCTTCCTGCCGCTACGATGCTC
TGGAGGTCTTTGCTGGCTCTGGCACCTCAGGCCAGCGACTTGGACGCTTCTGCGGCACCTTCAGGCCTGC
ACCTGTAGTCGCACCTGGCAACCAAGTGACTTTAAGGATGACAACTGACGAGGGCACCGGGGGACGAGGC
TTCCTGCTCTGGTACAGCGGCCGGGCCACTTCGGGCACTGAGCACCAGTTTTGTGGGGGGCGGATGGAGA
AGGCGCAGGGAACCTTGACCACGCCCAACTGGCCTGAGTCGGATTACCCACCAGGCATCAGCTGTTCCTG
GCACATCATTGCACCCTCAAACCAGGTGATCATGCTAACCTTTGGGAAGTTTGATGTGGAGCCTGACACG
TACTGCCGATATGACTCTGTCAGTGTGTTTAACGGAGCTGTGAGTGACGACTCAAAGAGGCTGGGGAAAT
TTTGCGGAGACAAGGCCCCTAGCCCCATCTCTTCTGAAGGGAACGAGCTCCTGGTCCAGTTTGTATCAGA
TCTCAGTGTCACCGCAGATGGCTTCTCAGCCTCCTACAGGACCCTGCCACGGGATGCCGTAGAGAAGGAG
TCAGCCCTGAGTCCAGGGGAGGACGTACAGCGTGGTCCCCAGTCCCGCTCTGACCCTAAGACAGGAACTG
GGCCCAAAGTCAAACCACCCACTAAACCTAAATCCCAACCTGCAGAGACACCAGAGGCTTCCCCTGCTAC
CCAGGCAACCCCAGTGGCCCCAGCTGCCCCCAGCATCACCTGCCCAAAGCAGTACAAGCGGTCAGGCACC
TTGCAGAGCAACTTCTGTTCCAGTAGCCTAGTGGTGACAGGAACAGTGAAGACCATGGTCCGGGGCCCCG
GGGAAGGCCTCACTGTCACTGTCAGTCTCCTTGGTGTCTACAAAACCGGAGGACTGGACCTGCCCTCTCC
GCCCAGTGGCACCTCTCTGAAGTTGTATGTGCCCTGCAGGCAGATGCCCCCCATGAAGAAAGGAGCCAGT
TATCTGCTGATGGGTCAGGTGGAAGAAAACAGAGGCCCCATCCTTCCTCCAGAGAGCTTCGTGGTTCTCT
ACAGGTCCAACCAGGACCAGATCCTCAATAACCTAAGCAAGAGGAAGTGTCCCTCCCAACCTAGGACAGC
TGCCTGA

Translation (468 aa):
MLPAALTSFLGPFLLAWVLPLARGQTPNYTRPVFLCGGDVTGESGYVASEGFPNLYPPNKKCIWTITVPE
GQTVSLSFRVFDMELHPSCRYDALEVFAGSGTSGQRLGRFCGTFRPAPVVAPGNQVTLRMTTDEGTGGRG
FLLWYSGRATSGTEHQFCGGRMEKAQGTLTTPNWPESDYPPGISCSWHIIAPSNQVIMLTFGKFDVEPDT
YCRYDSVSVFNGAVSDDSKRLGKFCGDKAPSPISSEGNELLVQFVSDLSVTADGFSASYRTLPRDAVEKE
SALSPGEDVQRGPQSRSDPKTGTGPKVKPPTKPKSQPAETPEASPATQATPVAPAAPSITCPKQYKRSGT
LQSNFCSSSLVVTGTVKTMVRGPGEGLTVTVSLLGVYKTGGLDLPSPPSGTSLKLYVPCRQMPPMKKGAS
YLLMGQVEENRGPILPPESFVVLYRSNQDQILNNLSKRKCPSQPRTAA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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