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Report for CCDS18850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18850.1 Public Mus musculus 4 Pax7 23 108 98 CCDS HistoryNCBI Gene:18509Re-query CCDS DB by CCDS ID:18850.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030508.13 ENSMUSP00000030508.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030508.13Link to Ensembl Protein Viewer:ENSMUSP00000030508.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030508Re-query CCDS DB by Protein ID:ENSMUSP00000030508
Original member NCBI NM_011039.2 NP_035169.1 Updated not alive Link to Nucleotide Sequence:NM_011039.2Link to Protein Sequence:NP_035169.1Re-query CCDS DB by Nucleotide ID:NM_011039Re-query CCDS DB by Protein ID:NP_035169
Current member NCBI NM_011039.3 NP_035169.1 Accepted alive Link to Nucleotide Sequence:NM_011039.3Link to Protein Sequence:NP_035169.1Re-query CCDS DB by Nucleotide ID:NM_011039Re-query CCDS DB by Protein ID:NP_035169Link to BLAST:NP_035169.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035169.1 503 P47239 503 100% 0 0

Chromosomal Locations for CCDS 18850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139740787 139740902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139748932 139749178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139779576 139779778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139780761 139780926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139784483 139784682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139828576 139828704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139829497 139829626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139830138 139830373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139832827 139832911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGCGGCGCTGCCCGGCGCGGTCCCCAGGATGATGAGACCCGGCCCGGGGCAGAACTACCCGCGCACCG
GCTTCCCCCTGGAAGTGTCCACCCCTCTTGGCCAAGGCCGGGTCAATCAGCTTGGTGGGGTCTTCATCAA
CGGTCGACCCCTGCCGAACCACATCCGTCACAAGATAGTGGAAATGGCCCACCATGGCATCCGGCCCTGC
GTCATCTCCCGTCAGCTCCGTGTTTCCCATGGTTGTGTCTCCAAGATTCTGTGCCGATATCAGGAGACTG
GGTCCATCCGGCCCGGGGCTATCGGAGGCAGCAAGCCCAGACAGGTGGCGACTCCGGATGTGGAGAAAAA
GATTGAGGAGTATAAGAGAGAGAACCCCGGGATGTTCAGCTGGGAAATCCGGGACCGGCTGCTGAAGGAC
GGTCACTGCGACCGAAGCACGGTGCCCTCAGTGAGTTCGATTAGCCGAGTGCTCAGAATCAAGTTCGGGA
AGAAAGAGGACGACGAGGAAGGAGACAAGAAAGAAGAAGATGGCGAGAAGAAAGCCAAACACAGCATCGA
TGGCATCCTGGGCGACAAAGGGAACCGTCTGGATGAGGGCTCAGATGTGGAATCAGAACCCGACCTCCCC
CTGAAGCGCAAGCAGCGCCGCAGTCGGACCACGTTCACAGCCGAGCAGCTGGAGGAGCTGGAGAAGGCCT
TCGAGAGGACCCACTACCCGGACATCTACACCCGGGAGGAGCTGGCACAGAGGACCAAGCTCACGGAGGC
ACGCGTCCAGGTCTGGTTCAGTAACCGGCGTGCCCGCTGGCGTAAGCAGGCAGGAGCTAACCAGCTGGCC
GCCTTCAACCACCTTCTGCCGGGAGGTTTCCCACCCACCGGCATGCCCACGCTGCCACCCTACCAGCTGC
CGGACTCTACCTACCCCACCACCACCATCTCCCAAGATGGAGGCAGCACAGTACACAGGCCCCAGCCCCT
TCCGCCATCAACCATGCATCAGGGTGGGCTGGCTGCGGCCGCTGCAGCAGCGGACACCAGCTCTGCCTAC
GGAGCCCGCCACAGCTTCTCCAGCTACTCTGACAGCTTCATGAACCCTGGGGCTCCCTCCAACCACATGA
ACCCTGTCAGCAATGGCCTGTCTCCTCAGGTCATGAGCATCCTTAGCAACCCGAGTGCCGTGCCTCCACA
GCCCCAGGCCGACTTCTCCATCTCCCCGCTGCATGGAGGCCTGGACTCGGCTTCCTCCATCTCAGCCAGC
TGCAGCCAACGGGCCGACTCCATCAAGCCAGGAGACAGCTTGCCCACGTCCCAGTCTTACTGCCCACCCA
CCTACAGCACCACTGGCTACAGTGTGGACCCTGTGGCTGGCTACCAGTACAGCCAGTATGGCCAAACTGC
TGTTGATTACCTGGCCAAAAACGTGAGCCTGTCCACACAGCGCCGTATGAAGCTTGGGGAACACTCCGCT
GTGCTGGGACTTCTTCCTGTGGAAACGGGACAAGCCTACTAG

Translation (503 aa):
MAALPGAVPRMMRPGPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPC
VISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKD
GHCDRSTVPSVSSISRVLRIKFGKKEDDEEGDKKEEDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLP
LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLA
AFNHLLPGGFPPTGMPTLPPYQLPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAY
GARHSFSSYSDSFMNPGAPSNHMNPVSNGLSPQVMSILSNPSAVPPQPQADFSISPLHGGLDSASSISAS
CSQRADSIKPGDSLPTSQSYCPPTYSTTGYSVDPVAGYQYSQYGQTAVDYLAKNVSLSTQRRMKLGEHSA
VLGLLPVETGQAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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