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Report for CCDS29469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29469.1 Public Mus musculus 19 Ovol1 23 108 98 CCDS HistoryNCBI Gene:18426Re-query CCDS DB by CCDS ID:29469.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025861.2 ENSMUSP00000025861.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025861.2Link to Ensembl Protein Viewer:ENSMUSP00000025861.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000025861Re-query CCDS DB by Protein ID:ENSMUSP00000025861
Original member Current member NCBI NM_019935.3 NP_064319.1 Accepted alive Link to Nucleotide Sequence:NM_019935.3Link to Protein Sequence:NP_064319.1Re-query CCDS DB by Nucleotide ID:NM_019935Re-query CCDS DB by Protein ID:NP_064319Link to BLAST:NP_064319.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064319.1 267 Q9WTJ2 267 100% 0 0

Chromosomal Locations for CCDS 29469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5550958 5551253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5551485 5551674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5553554 5553771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5560201 5560300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGCCTCGCGCGTTCCTGGTGAAGAAGCCATGCGTCTCCACGTGCAAGAGGAACTGGAGCGAGCTCCCGG
ACGAAGAGCGCGGCGAGATCTACGTGCCAGTCAGCCTCGGCTTCTGCCCACCACAGCCCTACCGGGAACC
AGAGGCATCGGTGGCCGAGCCTCCTTCCTGCCCCCTGGCTTTGGACATGAGCCTTCGAGACTCCAGCTAT
AGCGTGGCTCCAGGGCCCTGCGTGGTGGCCCAGCTACCCTCTGAAGATGTGAGCCATCTGACAGATCCCC
AGAGCAGAGACCAGGGCTTTCTACGAACCAAGATGAAGGTGACCTTGGGGGACAGTCCAAATGGAGACCT
TTTTACCTGCCACATCTGCCAGAAGTCCTTCACCCACCAGCGCATGCTGAATCGACACATGAAGTGTCAC
AACGACGTCAAGAGGCACCTCTGCACTTACTGTGGGAAGGGCTTCAATGACACCTTTGACCTCAAGAGAC
ATGTCCGAACCCACACTGGTGTGCGGCCCTACAAGTGCAGTCTGTGTGATAAGGCCTTCACTCAGCGCTG
CTCTCTGGAGTCCCACCTCAAGAAGATCCACGGAGTGCAGCAGAAGTATGCATACAAGGAGCGCCGGGCC
AAGCTCTACGTGTGTGAGGAGTGCGGTTGCACATCCGAGAGTCAAGAGGGTCATGTCCTGCACCTCAAGG
AACGCCACCCCGACAGCCCACTGCTGCGCAAGACCTCCAAGAAAGTGGCTGTGGCTCTGCAGAACACTGT
CACGTCCCTGCTGCAGGGCAGCCCCCATCTCTGA

Translation (267 aa):
MPRAFLVKKPCVSTCKRNWSELPDEERGEIYVPVSLGFCPPQPYREPEASVAEPPSCPLALDMSLRDSSY
SVAPGPCVVAQLPSEDVSHLTDPQSRDQGFLRTKMKVTLGDSPNGDLFTCHICQKSFTHQRMLNRHMKCH
NDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRA
KLYVCEECGCTSESQEGHVLHLKERHPDSPLLRKTSKKVAVALQNTVTSLLQGSPHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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