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Report for CCDS27910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27910.1 Public Mus musculus 16 Or2c1 23 108 98 CCDS HistoryNCBI Gene:18312Re-query CCDS DB by CCDS ID:27910.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080917.1 ENSMUSP00000079720.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080917.1Link to Ensembl Protein Viewer:ENSMUSP00000079720.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000080917Re-query CCDS DB by Protein ID:ENSMUSP00000079720
Original member Current member EBI ENSMUST00000214238.1 ENSMUSP00000149504.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214238.1Link to Ensembl Protein Viewer:ENSMUSP00000149504.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214238Re-query CCDS DB by Protein ID:ENSMUSP00000149504
Original member Current member EBI ENSMUST00000214590.1 ENSMUSP00000150757.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214590.1Link to Ensembl Protein Viewer:ENSMUSP00000150757.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214590Re-query CCDS DB by Protein ID:ENSMUSP00000150757
Original member Current member NCBI NM_008762.2 NP_032788.2 Accepted alive Link to Nucleotide Sequence:NM_008762.2Link to Protein Sequence:NP_032788.2Re-query CCDS DB by Nucleotide ID:NM_008762Re-query CCDS DB by Protein ID:NP_032788Link to BLAST:NP_032788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032788.2 312 P23275 312 100% 0 0

Chromosomal Locations for CCDS 27910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3838975 3839913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGGTGGACAGCAACAGCTCCTCTGGGAGCTTCATTCTGATGGGTGTCTCTGACCATCCCCATCTGG
AGATCATCTTTTTTGCTGTCATCCTGGCCTCTTACTTGTTGACGCTGGTTGGGAACTTGACCATCATCCT
GCTTTCGCGCCTTGATGCTCGGCTCCACACACCCATGTACTTCTTCCTCAGCAACCTCTCCTCTCTAGAC
CTTGCCTTTACTACCAGTTCAGTCCCTCAGATGCTGAAAAATTTATGGGGGCCAGACAAGACAATCAGCT
ATGGTGGGTGTGTAACTCAACTCTATGTTTTCCTTTGGCTGGGGGCTACTGAGTGCATACTGCTCGTGGT
GATGGCATTTGATCGGTATGTGGCAGTTTGTCGGCCCCTGCACTACATGACCGTCATGAATCCTCGCCTC
TGCTGGGGGCTGGCTGCTATTAGCTGGTTGGGTGGCTTAGGCAACTCCGTGATTCAGTCAACATTCACTC
TCCAGCTCCCATTTTGCGGACACCGAAAAGTGGACAACTTCCTGTGTGAGGTACCCGCCATGATTAAATT
GGCCTGTGGAGACACAAGTCTCAATGAGGCGGTGCTCAATGGTGTTTGTACCTTCTTCACTGTGGTCCCA
GTAAGCGTCATCCTGGTCTCTTACTGCTTCATTGCTCAGGCAGTGATGAAGATCCGCTCTGTGGAGGGAC
GTCGAAAGGCTTTCAATACGTGTGTCTCCCACTTGGTGGTAGTGTTTCTCTTCTATGGCTCTGCGATCTA
TGGGTATCTGCTTCCAGCTAAGAGCAGTAATCAAAGCCAAGGAAAATTCATTTCTCTCTTCTACTCTGTG
GTCACACCCATGGTGAATCCGCTCATCTATACTCTAAGAAACAAAGAAGTGAAGGGGGCCCTGGGAAGAT
TGCTGGGGAAAGGAAGAGGAGCCAGCTGA

Translation (312 aa):
MEVDSNSSSGSFILMGVSDHPHLEIIFFAVILASYLLTLVGNLTIILLSRLDARLHTPMYFFLSNLSSLD
LAFTTSSVPQMLKNLWGPDKTISYGGCVTQLYVFLWLGATECILLVVMAFDRYVAVCRPLHYMTVMNPRL
CWGLAAISWLGGLGNSVIQSTFTLQLPFCGHRKVDNFLCEVPAMIKLACGDTSLNEAVLNGVCTFFTVVP
VSVILVSYCFIAQAVMKIRSVEGRRKAFNTCVSHLVVVFLFYGSAIYGYLLPAKSSNQSQGKFISLFYSV
VTPMVNPLIYTLRNKEVKGALGRLLGKGRGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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