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Report for CCDS23865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23865.1 Public Mus musculus 10 Oit3 23 108 98 CCDS HistoryNCBI Gene:18302Re-query CCDS DB by CCDS ID:23865.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009798.4 ENSMUSP00000009798.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009798.4Link to Ensembl Protein Viewer:ENSMUSP00000009798.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000009798Re-query CCDS DB by Protein ID:ENSMUSP00000009798
Original member Current member NCBI NM_010959.2 NP_035089.1 Accepted alive Link to Nucleotide Sequence:NM_010959.2Link to Protein Sequence:NP_035089.1Re-query CCDS DB by Nucleotide ID:NM_010959Re-query CCDS DB by Protein ID:NP_035089Link to BLAST:NP_035089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035089.1 546 Q8R4V5-1 546 100% 0 0

Chromosomal Locations for CCDS 23865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 59423939 59424112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59425377 59425476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59427944 59428359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59429491 59429651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59430893 59431015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59435867 59435989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59437710 59437817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59438541 59438915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 59441623 59441683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGCCTCTGTCCCTGCTGCTCACCTGCCTCTCCACCACAGTCACCTTGGTGTCACCTGCGGTCCTAGATC
CTTGTTCCGCTTACATCAGTCTGAACGAGCCCTGGAGGAACACTGACCACCAGTTCGACGAGTCCCAGAA
TCAACCTCTTTGCGACAACCATATGAACGGGGAGTGGTATCGCTTCACGGGGATGGCAGGAGATGCCATG
CCTACCTTCTGCATACCGGAAAATCACTGTGGGACCCATGCTCCTGTCTGGCTCAATGGCAGCCACCCCC
TAGAAGAGGATGGCATTGTGCAACGCCAGGCCTGTGCCAGCTTCAAAGGAAACTGCTGTCTGTGGAACGC
CACGGTGGAAGTCAAGGCCTGCCCCAGAGGCTACTACGTGTATCGGCTGGCCAGACCCAGCGTCTGCTTC
CATGTCTACTGTGGCCATTTCTATGACATCTGTGATGAGGATTGTCACGGCAACTGCCTGGATACCACCG
AGTGTGCATGCTCTCCAGGAACCTCGCTGGGCCCAGATGGGCAGACTTGCTTTGACGAAAATGAATGTGA
GCACAACAACGGTGGCTGCAGCGAGATCTGCGTGAACCTCAAAAACTCACACCGCTGCGCATGCGGGGTT
GGCCGCGTGCTCAGGAGCGACGGGAAGACTTGCGAAGACATCGAAGGTTGTCACAACAACAATGGTGGCT
GCAGCCATTCCTGCCTTGGGTCTGAGGAGGGCTATCAGTGTGAATGTCCCCGGGGCTTGGTGCTGTCTGA
AGATAATCACACTTGCCAAGTCCCCGTGTTGTGCAAGTCCAGCGCCATTGAAGTGAGTGTCCCCCGGGAG
CTGGTTGGAGGCCTGGAGCTCTTCCTGACCAACACCTCCTGCCGAGGAGTGTCCAATGGCACCCACGTCA
ACATCGTCTTCTCACTCAAGACCTGCGGCACCGTGGTTGACGTGGTGAATGACAAAATCGTGGCCAGCAA
CATCGTGACGGGCCTGCCCAAGGAGACCCCTGGGAGCAGTGGGGACATCATCATTCGGACCAGCAAACTG
TTGATCCCCGTGACCTGCGAGTTCCCACGACTGTACACCATCTCGGAAGGATACGTGCCCAACCTGCGCA
ATGCCCCATTGGAAATCAGGAGCCGAAACCACGGCATCTTTCCCTTCACACTGGAGATTTTCAAGGACCA
CGAATTCGAGGAACCGTACCGGGAGACTCTGCCCACACTCAAGCTTCGCGACTCACTCTACTTTGGCATA
GAGCCCCTGGTGCATGTGAACGGCCTGGAGAGCCTGGTAGAGAGCTGCTTTGCCACGCCCACTGCAAAGA
TGGATGAAATCCTCAAGTACTACCTGATCCAGGACGGCTGTGTTTCCGATGACTCAGTAAAGCAGTACTC
ATCCAGGGACCACCTAGCAAAGCACTTCCAAGCCCCCGTCTTCAAGTTTGTGGGCAAAGACCACAAGGAG
GTATTTTTACACTGCCGCGTCCTTGTATGTGGGGTGCTGGATGAGCGTTCCCGCTGTGCCCAAGGGTGCC
ACCGAAGAGTACGTCGTGAGGTGGGTGAGGACGAGGACTCTGCTGGGCTGCAGAGCCAGACACTGACAGG
TGGCCCCATCGCCATCGACTGGGAGGACTAG

Translation (546 aa):
MPLSLLLTCLSTTVTLVSPAVLDPCSAYISLNEPWRNTDHQFDESQNQPLCDNHMNGEWYRFTGMAGDAM
PTFCIPENHCGTHAPVWLNGSHPLEEDGIVQRQACASFKGNCCLWNATVEVKACPRGYYVYRLARPSVCF
HVYCGHFYDICDEDCHGNCLDTTECACSPGTSLGPDGQTCFDENECEHNNGGCSEICVNLKNSHRCACGV
GRVLRSDGKTCEDIEGCHNNNGGCSHSCLGSEEGYQCECPRGLVLSEDNHTCQVPVLCKSSAIEVSVPRE
LVGGLELFLTNTSCRGVSNGTHVNIVFSLKTCGTVVDVVNDKIVASNIVTGLPKETPGSSGDIIIRTSKL
LIPVTCEFPRLYTISEGYVPNLRNAPLEIRSRNHGIFPFTLEIFKDHEFEEPYRETLPTLKLRDSLYFGI
EPLVHVNGLESLVESCFATPTAKMDEILKYYLIQDGCVSDDSVKQYSSRDHLAKHFQAPVFKFVGKDHKE
VFLHCRVLVCGVLDERSRCAQGCHRRVRREVGEDEDSAGLQSQTLTGGPIAIDWED


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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