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Report for CCDS30190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30190.1 Public Mus musculus X Nsdhl 23 108 98 CCDS HistoryNCBI Gene:18194Re-query CCDS DB by CCDS ID:30190.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033715.4 ENSMUSP00000033715.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033715.4Link to Ensembl Protein Viewer:ENSMUSP00000033715.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033715Re-query CCDS DB by Protein ID:ENSMUSP00000033715
Original member Current member NCBI NM_010941.3 NP_035071.3 Accepted alive Link to Nucleotide Sequence:NM_010941.3Link to Protein Sequence:NP_035071.3Re-query CCDS DB by Nucleotide ID:NM_010941Re-query CCDS DB by Protein ID:NP_035071Link to BLAST:NP_035071.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035071.3 362 Q9R1J0 362 100% 0 0

Chromosomal Locations for CCDS 30190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 72926336 72926410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72929624 72929782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72949165 72949311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72952843 72952971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72955072 72955214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72956337 72956439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 72957282 72957614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAACAAGCTGTTCATGGTGAATCAAAGCGAGGCCAGGTCACAGGAACACATTTGACAAATGACATTT
CCAAAGCTAAGAAGTGCACAGTGATTGGAGGCTCTGGGTTCCTGGGGCAGCACATGGTGGAGCAGTTGCT
GGAGCGAGGCTATACTGTCAATGTATTTGATATCCACCAAGGCTTTGATAACCCCCGGGTGCAGTTCTTT
ATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCACTGCG
CGTCCCCTCCGCCGTACAGTAACAACAAGGAGCTCTTTTATAGAGTGAATTTCATTGGCACCAAGACTGT
CATTGAAACCTGCAGAGAGGCCGGAGTTCAGAAACTCATTTTAACCAGCAGTGCCAGTGTTGTCTTTGAG
GGTGTTGACATAAAAAATGGAACTGAAGACCTCCCTTACGCCATGAAGCCTATTGACTATTACACAGAGA
CCAAGATCTTGCAGGAGAGAGCAGTACTGGATGCCAACGACCCTAAGAAGAATTTTTTAACCGCAGCCAT
TCGTCCTCATGGCATTTTCGGCCCAAGGGACCCCCAGTTGGTCCCAATCCTAATTGATGCAGCTAGAAAG
GGCAAAATGAAGTTCATGATTGGAAATGGGGAAAACCTGGTGGACTTCACCTTCGTGGAGAATGTGGTTC
ATGGACACATCTTAGCCGCTGAGCACCTCTCCCAAGATGCAGCTCTAGGTGGAAAGGCATTTCACATCAC
CAACGATGAACCAATCCCTTTCTGGACGTTCCTGTCCCGCATTCTGACAGGCCTCAATTATGAGGCCCCT
AAGTACCACATCCCCTACTGGATGGCCTATTACCTTGCTTTCCTGCTATCTCTACTGGTGATGGTGGTCA
GCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCACTATTA
CAGTTGTGAAAAAGCCAAAAAGCTCTTTGGGTACCGGCCACTGGTCACCATGGATGAAGCTGTGGAAAGG
ACTGTGCAGAGTTTCCACCACCTGCGGAAGGACAAGTGA

Translation (362 aa):
MEQAVHGESKRGQVTGTHLTNDISKAKKCTVIGGSGFLGQHMVEQLLERGYTVNVFDIHQGFDNPRVQFF
IGDLCNQQDLYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLILTSSASVVFE
GVDIKNGTEDLPYAMKPIDYYTETKILQERAVLDANDPKKNFLTAAIRPHGIFGPRDPQLVPILIDAARK
GKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALGGKAFHITNDEPIPFWTFLSRILTGLNYEAP
KYHIPYWMAYYLAFLLSLLVMVVSPLIQIQPTFTPIRVALAGTFHYYSCEKAKKLFGYRPLVTMDEAVER
TVQSFHHLRKDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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