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Report for CCDS15047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15047.1 Public Mus musculus 1 Slc11a1 23 108 98 CCDS HistoryNCBI Gene:18173Re-query CCDS DB by CCDS ID:15047.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027368.5 ENSMUSP00000027368.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027368.5Link to Ensembl Protein Viewer:ENSMUSP00000027368.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027368Re-query CCDS DB by Protein ID:ENSMUSP00000027368
Original member Current member NCBI NM_013612.2 NP_038640.2 Accepted alive Link to Nucleotide Sequence:NM_013612.2Link to Protein Sequence:NP_038640.2Re-query CCDS DB by Nucleotide ID:NM_013612Re-query CCDS DB by Protein ID:NP_038640Link to BLAST:NP_038640.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038640.2 548 P41251 548 100% 0 0

Chromosomal Locations for CCDS 15047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74375315 74375321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74375718 74375851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74376793 74376915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74377157 74377276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74379783 74379889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74380197 74380267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74380609 74380676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74380842 74380997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74381736 74381894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74383438 74383527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74383625 74383744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74384024 74384173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74384697 74384770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74385141 74385294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74385393 74385506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGATTAGTGACAAGAGCCCCCCGAGGCTGAGCAGGCCCAGTTATGGCTCCATTTCCAGCCTGCCTGGCC
CAGCACCTCAGCCAGCGCCTTGCCGGGAGACCTACCTGAGTGAGAAGATCCCCATTCCCAGCGCAGACCA
GGGTACATTCAGCCTGAGGAAGCTGTGGGCGTTCACGGGGCCTGGTTTCCTCATGAGCATCGCTTTCCTT
GACCCGGGAAACATTGAGTCCGACCTTCAAGCTGGCGCTGTGGCTGGGTTCAAACTCCTCTGGGTGCTGC
TCTGGGCGACTGTGCTAGGTTTGCTGTGCCAGCGGCTGGCTGCCCGGCTGGGCGTGGTGACAGGCAAGGA
CTTGGGTGAAGTCTGCCATCTCTACTACCCCAAGGTGCCCCGCATCCTCCTCTGGCTGACCATTGAGCTG
GCCATTGTGGGCTCAGATATGCAGGAAGTCATCGGGACGGCTATCTCCTTCAATCTGCTCTCCGCTGGAC
GCATCCCGCTGTGGGACGGTGTACTGATCACCATTGTGGACACCTTCTTCTTCCTCTTCTTGGATAACTA
TGGTTTGCGCAAGCTGGAAGCTTTCTTCGGTCTCCTCATTACCATAATGGCTTTGACCTTCGGCTATGAG
TATGTGGTAGCACACCCTTCCCAGGGAGCGCTCCTTAAGGGCCTGGTGCTGCCCACCTGTCCGGGCTGTG
GGCAGCCCGAGCTGCTGCAGGCAGTGGGCATCGTCGGTGCCATCATCATGCCCCATAACATCTACCTGCA
CTCAGCCTTGGTCAAGTCTAGAGAAGTAGACAGAACCCGCCGGGTGGATGTTCGAGAAGCCAACATGTAC
TTCCTGATTGAGGCCACCATCGCCCTATCGGTGTCCTTCATCATCAACCTCTTCGTCATGGCTGTTTTTG
GTCAGGCCTTCTACCAGCAAACCAATGAGGAAGCGTTCAACATCTGTGCCAACAGCAGCCTCCAGAACTA
TGCTAAGATCTTCCCCAGGGACAATAACACTGTGTCAGTGGATATTTATCAAGGAGGTGTGATCCTAGGC
TGTCTCTTTGGCCCTGCGGCCCTCTACATCTGGGCAGTAGGTCTCCTGGCAGCGGGGCAGAGTTCTACTA
TGACCGGCACCTATGCAGGACAGTTCGTGATGGAGGGTTTCCTTAAGCTGCGGTGGTCCCGCTTCGCTCG
GGTCCTTCTCACGCGCTCTTGCGCCATCCTGCCCACTGTGTTGGTGGCTGTCTTCCGAGACCTGAAGGAC
CTGTCCGGCCTCAACGATCTACTCAATGTTCTGCAGAGTCTACTGCTGCCCTTCGCTGTACTGCCCATTT
TGACTTTCACCAGCATGCCAGCTGTCATGCAGGAGTTTGCCAACGGCCGGATGAGCAAAGCCATCACTTC
GTGCATCATGGCGCTAGTCTGCGCCATCAACCTGTACTTTGTGATCAGCTACCTGCCCAGCCTCCCGCAC
CCTGCCTACTTTGGCCTTGTGGCTCTGTTCGCAATAGGTTACTTGGGCCTGACTGCTTATCTGGCCTGGA
CCTGTTGCATCGCCCACGGAGCCACCTTCCTGACCCACAGCTCCCACAAGCACTTCTTATATGGGCTCCC
TAACGAGGAGCAGGGAGGCGTGCAGGGTTCCGGGTGA

Translation (548 aa):
MISDKSPPRLSRPSYGSISSLPGPAPQPAPCRETYLSEKIPIPSADQGTFSLRKLWAFTGPGFLMSIAFL
DPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQRLAARLGVVTGKDLGEVCHLYYPKVPRILLWLTIEL
AIVGSDMQEVIGTAISFNLLSAGRIPLWDGVLITIVDTFFFLFLDNYGLRKLEAFFGLLITIMALTFGYE
YVVAHPSQGALLKGLVLPTCPGCGQPELLQAVGIVGAIIMPHNIYLHSALVKSREVDRTRRVDVREANMY
FLIEATIALSVSFIINLFVMAVFGQAFYQQTNEEAFNICANSSLQNYAKIFPRDNNTVSVDIYQGGVILG
CLFGPAALYIWAVGLLAAGQSSTMTGTYAGQFVMEGFLKLRWSRFARVLLTRSCAILPTVLVAVFRDLKD
LSGLNDLLNVLQSLLLPFAVLPILTFTSMPAVMQEFANGRMSKAITSCIMALVCAINLYFVISYLPSLPH
PAYFGLVALFAIGYLGLTAYLAWTCCIAHGATFLTHSSHKHFLYGLPNEEQGGVQGSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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