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Report for CCDS15771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15771.1 Public Mus musculus 2 Npdc1 23 108 98 CCDS HistoryNCBI Gene:18146Re-query CCDS DB by CCDS ID:15771.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071442.11 ENSMUSP00000071387.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071442.11Link to Ensembl Protein Viewer:ENSMUSP00000071387.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071442Re-query CCDS DB by Protein ID:ENSMUSP00000071387
Original member NCBI NM_008721.4 NP_032747.2 Updated not alive Link to Nucleotide Sequence:NM_008721.4Link to Protein Sequence:NP_032747.2Re-query CCDS DB by Nucleotide ID:NM_008721Re-query CCDS DB by Protein ID:NP_032747
Current member NCBI NM_008721.5 NP_032747.2 Accepted alive Link to Nucleotide Sequence:NM_008721.5Link to Protein Sequence:NP_032747.2Re-query CCDS DB by Nucleotide ID:NM_008721Re-query CCDS DB by Protein ID:NP_032747Link to BLAST:NP_032747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032747.2 332 Q64322 332 100% 0 0

Chromosomal Locations for CCDS 15771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25403254 25403365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25406215 25406361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25407596 25407736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25407841 25408014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25408114 25408180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25408260 25408347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25408607 25408686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25408905 25409001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25409099 25409191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCGACGCCCGTCCCTCCGCCTTCCCCGCGGCACCTGCGGCTGCTACGGCTGCTGCTCTCCGGCCTCA
TCCTGGGAGCGGCCCTGAATGGTGCCACCGCCCGCCGCCCGGATGCTACCACCTGTCCTGGAAGCCTGGA
TTGTGCACTGAAGAGGCGGGCAAAATGCCCACCAGGGGCACATGCCTGTGGACCATGCCTTCAGTCCTTC
CAGGAAGACCAGCGAGGGTTCTGTGTGCCAAGGAAACACCTATCTTCTGGGGAGGGCCTGCCCCAGCCCA
GACTGGAAGAGGAGATCGATTCTCTGGCCCAGGAACTGGCACTGAAGGAGAAGGAGGCGGGGCACTCAAG
GCTGACCGCACAGCCCTTGCTTGAGGCTGCGCAGAAGCTCCTGGAGCCTGCAGCTACCCTGGGATTCTCA
CAGTGGGGTCAACGACTGGAGCCCGGGCTCCCCTCTACTCATGGAACCTCTTCACCTATACCCCATACTT
CCTTGAGTTCCCGAGCATCCTCTGGACCTGTGCAGATGTCCCCGCTGGAGCCCCAGGGAAGGCATGGGAA
TGGCCTCACCCTTGTGCTGATCCTGGCTTTCTGCTTAGCAAGCTCAGCCGCCCTGGCTGTGGCAGCCCTC
TGCTGGTGTAGGCTTCAGCGAGAGATCCGCCTGACTCAGAAGGCTGACTATGCTGCCACAGCTAAGGGGC
CCACTTCACCTTCAACACCACGAATCTCGCCTGGGGATCAGCGGCTGGCACACAGTGCTGAGATGTATCA
TTATCAGCACCAGAGACAGCAGATGCTGTGCCTGGAGCGGCATAAGGAACCTCCAAAGGAACTAGAGTCA
GCTTCCTCCGATGAGGAAAATGAAGATGGCGACTTCACTGTGTATGAATGCCCAGGCCTGGCGCCAACAG
GGGAGATGGAGGTGCGCAACCCACTGTTTGACCATTCCACGCTGTCAGCACCAGTGCCTGGTCCCCATTC
CTTGCCGCCGCTGCAGTGA

Translation (332 aa):
MATPVPPPSPRHLRLLRLLLSGLILGAALNGATARRPDATTCPGSLDCALKRRAKCPPGAHACGPCLQSF
QEDQRGFCVPRKHLSSGEGLPQPRLEEEIDSLAQELALKEKEAGHSRLTAQPLLEAAQKLLEPAATLGFS
QWGQRLEPGLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQGRHGNGLTLVLILAFCLASSAALAVAAL
CWCRLQREIRLTQKADYAATAKGPTSPSTPRISPGDQRLAHSAEMYHYQHQRQQMLCLERHKEPPKELES
ASSDEENEDGDFTVYECPGLAPTGEMEVRNPLFDHSTLSAPVPGPHSLPPLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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