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Report for CCDS25247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25247.1 Public Mus musculus 11 Nme1 23 108 98 CCDS HistoryNCBI Gene:18102Re-query CCDS DB by CCDS ID:25247.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25247.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135884.7 ENSMUSP00000117022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135884.7Link to Ensembl Protein Viewer:ENSMUSP00000117022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135884Re-query CCDS DB by Protein ID:ENSMUSP00000117022
Original member NCBI NM_008704.2 NP_032730.1 Updated not alive Link to Nucleotide Sequence:NM_008704.2Link to Protein Sequence:NP_032730.1Re-query CCDS DB by Nucleotide ID:NM_008704Re-query CCDS DB by Protein ID:NP_032730
Current member NCBI NM_008704.3 NP_032730.1 Accepted alive Link to Nucleotide Sequence:NM_008704.3Link to Protein Sequence:NP_032730.1Re-query CCDS DB by Nucleotide ID:NM_008704Re-query CCDS DB by Protein ID:NP_032730Link to BLAST:NP_032730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032730.1 152 P15532 152 100% 0 0

Chromosomal Locations for CCDS 25247.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93959396 93959513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93960668 93960780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93963227 93963328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93965808 93965933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGGCCAACAGTGAGCGCACCTTCATTGCCATCAAGCCTGATGGGGTCCAGCGGGGGCTGGTGGGCGAGA
TCATCAAGCGGTTCGAGCAGAAGGGGTTCCGCCTTGTTGGTCTGAAGTTTCTGCAGGCTTCAGAGGACCT
TCTCAAGGAGCACTACACTGACCTGAAGGACCGCCCCTTCTTTACTGGCCTGGTGAAATACATGCACTCA
GGACCAGTGGTTGCTATGGTCTGGGAGGGTCTGAATGTGGTGAAGACAGGCCGCGTGATGCTTGGAGAGA
CCAACCCCGCAGACTCTAAGCCTGGGACCATACGAGGAGACTTCTGCATCCAAGTTGGCAGGAACATCAT
TCATGGCAGCGATTCTGTAAAGAGCGCAGAGAAGGAGATCAGCTTGTGGTTTCAGCCTGAGGAGCTGGTG
GAGTACAAGAGCTGTGCGCAGAACTGGATCTATGAGTGA

Translation (152 aa):
MANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFLQASEDLLKEHYTDLKDRPFFTGLVKYMHS
GPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFQPEELV
EYKSCAQNWIYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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