NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30034.1 Public Mus musculus X Ndp 23 108 98 CCDS HistoryNCBI Gene:17986Re-query CCDS DB by CCDS ID:30034.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040134.7 ENSMUSP00000046692.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040134.7Link to Ensembl Protein Viewer:ENSMUSP00000046692.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040134Re-query CCDS DB by Protein ID:ENSMUSP00000046692
Original member Current member NCBI NM_010883.3 NP_035013.1 Accepted alive Link to Nucleotide Sequence:NM_010883.3Link to Protein Sequence:NP_035013.1Re-query CCDS DB by Nucleotide ID:NM_010883Re-query CCDS DB by Protein ID:NP_035013Link to BLAST:NP_035013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035013.1 131 P48744 131 100% 0 0

Chromosomal Locations for CCDS 30034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 16886469 16886696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 16894408 16894575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGAGAAATCATGTACTAGCTGCATCCATTTCTATGCTCTCCCTGCTGGCCATAATGGGAGATACAGACA
GCAAAACAGACAGTTCATTTCTGATGGACTCTCAACGCTGCATGAGACACCATTATGTCGATTCTATCAG
TCACCCACTGTACAAATGTAGCTCAAAGATGGTGCTCCTGGCCAGATGTGAGGGGCACTGCAGCCAGGCA
TCACGCTCTGAGCCCTTGGTGTCCTTCAGCACTGTCCTCAAGCAACCTTTCCGTTCCTCCTGTCACTGCT
GCCGACCCCAGACTTCCAAGCTGAAGGCTCTGCGTCTGCGCTGCTCAGGGGGCATGCGACTTACTGCCAC
TTACCGGTACATCCTCTCCTGTCACTGTGAGGAATGCAGCTCCTGA

Translation (131 aa):
MRNHVLAASISMLSLLAIMGDTDSKTDSSFLMDSQRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQA
SRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH