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Report for CCDS15367.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15367.1 Public Mus musculus 1 Ncf2 23 108 98 CCDS HistoryNCBI Gene:17970Re-query CCDS DB by CCDS ID:15367.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15367.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027754.6 ENSMUSP00000027754.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027754.6Link to Ensembl Protein Viewer:ENSMUSP00000027754.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027754Re-query CCDS DB by Protein ID:ENSMUSP00000027754
Original member Current member EBI ENSMUST00000186568.6 ENSMUSP00000140404.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186568.6Link to Ensembl Protein Viewer:ENSMUSP00000140404.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186568Re-query CCDS DB by Protein ID:ENSMUSP00000140404
Original member NCBI NM_010877.5 NP_035007.1 Updated not alive Link to Nucleotide Sequence:NM_010877.5Link to Protein Sequence:NP_035007.1Re-query CCDS DB by Nucleotide ID:NM_010877Re-query CCDS DB by Protein ID:NP_035007
Current member NCBI NM_010877.6 NP_035007.1 Accepted alive Link to Nucleotide Sequence:NM_010877.6Link to Protein Sequence:NP_035007.1Re-query CCDS DB by Nucleotide ID:NM_010877Re-query CCDS DB by Protein ID:NP_035007Link to BLAST:NP_035007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035007.1 525 O70145 525 100% 0 0

Chromosomal Locations for CCDS 15367.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152808032 152808205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152810918 152811000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152816991 152817099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152821516 152821650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152824217 152824324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152825882 152825941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152827418 152827461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152830352 152830493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152830693 152830761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152831614 152831689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152833323 152833345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152833777 152833928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152834069 152834180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152835027 152835204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152836002 152836114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGTCCCTGGCTGAGGCCATCAGACTCTGGAATGAAGGGGTGCTCGCAGCCGACAAGAAGGACTGGAAGG
GTGCCCTGGAGGCCTTCAGCGAGGTGCAGGACCCCCACTCGAGGATTTGCTTCAACATAGGCTGCGTGAA
CACTATCCTGGAAAACTTGCAGGCAGCCGAGCAGGCCTTCACCAAAAGCATCAACAGAGACAAGCACTCT
GCAGTGGCCTACTTCCAGAGAGGAATGCTCTACTACAGAATGGAGAAGTACGACCTTGCTATCAAAGACC
TTAAAGAGGCCTTGACGCAGCTTCGTGGGAACCAGCTGATAGACTACAAGATCCTGGGGCTGCAGTTCAA
GCTGTTTGCCTGTGAGGTATTGTACAATATTGCTCTCATGCATGCCAAGAAAGAGGAATGGAAGAAAGCA
GAAGAGCAGTTGGCATTGGCAACCAACATGAAGTCCGAGCCCAGGCATTCCAAGATCGACAAGGCCATGG
AGAGCATCTGGAAGCAGAAGCTGTTCGAGCCCGTGGTGATCCCTGTGGGTCGGCTGTTCCGTCCAAATGA
GAGGCAGGTGGCTCAGCTGGCCAAAAAGGACTATCTGGGCAAGGCTACGGTTGTAGCATCTGTGGTTCAC
CAAGACAACTTTTCTGGCTTCGCCCCTCTGCAGCCACAGTCAGCAGAGCCTCCTCCCAGACCCAAAACCC
CAGAAATCTTCAGGGCTCTGGAAGGTGAGGCACACCGCGTATTGTTTGGCTTTGTGCCGGAGACGCCAGA
AGAGCTACAGGTCATGCCTGGGAACATCGTCTTTGTCTTGAAGAAGGGCAGTGATAACTGGGCCACAGTC
ATGTTCAATGGACAGAAGGGGCTTGTCCCCTGCAACTACCTGGAGCCAGTTGAGCTTCGGATTCACCCTC
AGTCGCAGCCCCAGGAAGATACCTCTCCAGAATCCGATATTCCACCACCTCCTAATTCTAGCCCCCCAGG
AAGACTCCAGTTGTCACCAGGTCACAAGCAAAAAGAGCCCAAGGAACTGAAGCTCAGCGTGCCTATGCCT
TACATGCTCAAGGTGCATTACAAATACACAGTGGTCATGGAGACGCGGCTTGGCCTCCCCTACAGCCAGC
TTCGGAACATGGTGTCTAAGAAGCTGGCGCTCTCGCCAGAACACACTAAACTGAGCTACCGGCGTCGGGA
CAGCCACGAGCTTCTGCTCCTGTCCGAAGAAAGCATGAAGGATGCCTGGGGCCAAGTGAAAAACTACTGC
CTGACTCTGTGGTGTGAGCATACGGTGGGTGACCAAGGTCTTATTGATGAACCCATACAAAGGGAAAACT
CAGACGCCAGTAAGCAGACTACGGAGCCTCAGCCTAAGGAGGGGACCCAGGTGGTAGCAATCTTCAGTTA
TGAGGCTGCCCAGCCAGAAGACCTGGAATTTGTGGAAGGAGATGTAATCCTGGTACTGTCACATGTGAAT
GAAGAATGGCTGGAAGGGGAGTGTAAAGGGAAAGTTGGCATTTTCCCGAAGGCTTTTGTTGAAGGATGTG
CAGCCAAGAATTTGGAAGGCATTCCCAGAGAAGTCTAG

Translation (525 aa):
MSLAEAIRLWNEGVLAADKKDWKGALEAFSEVQDPHSRICFNIGCVNTILENLQAAEQAFTKSINRDKHS
AVAYFQRGMLYYRMEKYDLAIKDLKEALTQLRGNQLIDYKILGLQFKLFACEVLYNIALMHAKKEEWKKA
EEQLALATNMKSEPRHSKIDKAMESIWKQKLFEPVVIPVGRLFRPNERQVAQLAKKDYLGKATVVASVVH
QDNFSGFAPLQPQSAEPPPRPKTPEIFRALEGEAHRVLFGFVPETPEELQVMPGNIVFVLKKGSDNWATV
MFNGQKGLVPCNYLEPVELRIHPQSQPQEDTSPESDIPPPPNSSPPGRLQLSPGHKQKEPKELKLSVPMP
YMLKVHYKYTVVMETRLGLPYSQLRNMVSKKLALSPEHTKLSYRRRDSHELLLLSEESMKDAWGQVKNYC
LTLWCEHTVGDQGLIDEPIQRENSDASKQTTEPQPKEGTQVVAIFSYEAAQPEDLEFVEGDVILVLSHVN
EEWLEGECKGKVGIFPKAFVEGCAAKNLEGIPREV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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