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Report for CCDS22273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22273.1 Public Mus musculus 8 Mtnr1a 23 108 98 CCDS HistoryNCBI Gene:17773Re-query CCDS DB by CCDS ID:22273.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067984.8 ENSMUSP00000069872.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067984.8Link to Ensembl Protein Viewer:ENSMUSP00000069872.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067984Re-query CCDS DB by Protein ID:ENSMUSP00000069872
Original member Current member NCBI NM_008639.3 NP_032665.1 Accepted alive Link to Nucleotide Sequence:NM_008639.3Link to Protein Sequence:NP_032665.1Re-query CCDS DB by Nucleotide ID:NM_008639Re-query CCDS DB by Protein ID:NP_032665Link to BLAST:NP_032665.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032665.1 353 Q61184 353 100% 0 0

Chromosomal Locations for CCDS 22273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45069210 45069402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45087197 45088065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGAAGGGCAATGTCAGCGAGCTGCTCAATGCCACTCAGCAGGCTCCAGGCGGCGGGGAGGGAGGGAGAC
CACGACCGTCCTGGCTGGCCTCTACACTGGCCTTCATCCTCATCTTTACCATCGTGGTGGACATTCTGGG
CAACCTGCTGGTCATCCTGTCTGTGTACCGCAACAAGAAGCTCAGGAACTCAGGGAATATATTTGTGGTG
AGTTTAGCTGTGGCAGACCTCGTGGTGGCTGTTTACCCTTATCCCTTGGTGCTGACATCTATCCTTAACA
ACGGATGGAATCTGGGATATCTACACTGTCAAGTCAGCGCATTTCTAATGGGCTTGAGTGTCATCGGCTC
GATATTCAACATCACGGGGATCGCTATGAACCGTTACTGCTACATTTGCCACAGCCTCAAGTACGACAAA
ATATACAGTAACAAGAACTCGCTCTGCTACGTGTTCCTGATATGGATGCTGACACTCATCGCCATCATGC
CCAACCTGCAAACCGGAACACTCCAGTACGATCCCCGGATCTACTCCTGTACCTTCACCCAGTCTGTCAG
CTCAGCGTACACGATAGCAGTGGTGGTTTTCCATTTCATCGTGCCTATGATTATTGTCATCTTCTGCTAC
TTAAGGATATGGGTCCTGGTCCTTCAGGTCAGACGGAGGGTGAAACCCGACAACAAGCCCAAACTGAAGC
CCCAGGACTTCAGGAACTTTGTCACCATGTTCGTAGTTTTTGTACTTTTTGCCATTTGTTGGGCCCCACT
CAACCTCATAGGTCTTATTGTGGCCTCAGACCCTGCCACCATGGTCCCCAGGATCCCAGAGTGGCTGTTC
GTGGCTAGTTACTACCTGGCGTACTTCAACAGCTGCCTCAACGCAATTATATACGGACTACTGAATCAGA
ATTTCAGAAAGGAATACAAAAAGATTATTGTCTCGTTGTGCACAGCCAAGATGTTCTTTGTGGAGAGTTC
AAATGAAGAAGCAGATAAGATTAAATGTAAGCCCTCTCCACTAATACCCAATAATAACTTAATAAAGGTG
GACTCTGTTTAA

Translation (353 aa):
MKGNVSELLNATQQAPGGGEGGRPRPSWLASTLAFILIFTIVVDILGNLLVILSVYRNKKLRNSGNIFVV
SLAVADLVVAVYPYPLVLTSILNNGWNLGYLHCQVSAFLMGLSVIGSIFNITGIAMNRYCYICHSLKYDK
IYSNKNSLCYVFLIWMLTLIAIMPNLQTGTLQYDPRIYSCTFTQSVSSAYTIAVVVFHFIVPMIIVIFCY
LRIWVLVLQVRRRVKPDNKPKLKPQDFRNFVTMFVVFVLFAICWAPLNLIGLIVASDPATMVPRIPEWLF
VASYYLAYFNSCLNAIIYGLLNQNFRKEYKKIIVSLCTAKMFFVESSNEEADKIKCKPSPLIPNNNLIKV
DSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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