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Report for CCDS19238.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19238.1 Public Mus musculus 5 Grpel1 23 108 98 CCDS HistoryNCBI Gene:17713Re-query CCDS DB by CCDS ID:19238.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19238.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031099.3 ENSMUSP00000031099.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031099.3Link to Ensembl Protein Viewer:ENSMUSP00000031099.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031099Re-query CCDS DB by Protein ID:ENSMUSP00000031099
Original member Current member NCBI NM_024478.2 NP_077798.1 Accepted alive Link to Nucleotide Sequence:NM_024478.2Link to Protein Sequence:NP_077798.1Re-query CCDS DB by Nucleotide ID:NM_024478Re-query CCDS DB by Protein ID:NP_077798Link to BLAST:NP_077798.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077798.1 217 Q99LP6 217 100% 0 0

Chromosomal Locations for CCDS 19238.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36465194 36465255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36469438 36469600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36470602 36470683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36471056 36471402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGCGGCTCGGTGTGTGAGGCTGGCGCGCCGCAGCCTCCCGGCTTTGGCACTGTCGTTCAGGCCTTCTC
CTCGCTTGTTGTGCACAGCTACGAAACAGAAGAACAATGGCCAGAACCTGGACGAGGACTTGGGTCATTG
TGAGCCAAAGACAGATCCACCCTCTGCAGACAAGACCCTCCTGGAAGAGAAGGCAAAGCTGGAAGAGCAG
CTGAGAGAGACCATGGAAAAATACAAACGTGCTTTGGCAGATACTGAGAATCTACGGCAGAGAAGCCAGA
AGCTGGTAGAGGAGGCCAAGTTATATGGCATCCAGGGTTTCTGCAAGGACTTGCTGGAGGTTGCAGACAT
CCTGGAGAAGGCAACCCAGAGTGTTCCAAAGGAGGAGATCAGCAACAACAACCCTCACCTGAAGAGTCTT
TATGAAGGGCTCGTGATGACTGAAGTCCAGATTCAGAAGGTGTTCACAAAACACGGCTTGCTCAGGCTTG
ACCCAATTGGGGCCAAGTTCGACCCTTACGAACATGAGGCCTTGTTCCACACCCCTGTGGAGGGGAAAGA
ACCAGGCACTGTGGCACTAGTTAGTAAGGTGGGCTACAAGCTGCACGGACGCACCCTGAGGCCAGCTTTG
GTGGGGGTGGTGAAGGACGCTTAG

Translation (217 aa):
MAARCVRLARRSLPALALSFRPSPRLLCTATKQKNNGQNLDEDLGHCEPKTDPPSADKTLLEEKAKLEEQ
LRETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEISNNNPHLKSL
YEGLVMTEVQIQKVFTKHGLLRLDPIGAKFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLRPAL
VGVVKDA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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