NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35828.1 Public Mus musculus 1 Cd46 23 108 98 CCDS HistoryNCBI Gene:17221Re-query CCDS DB by CCDS ID:35828.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35828.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162650.7 ENSMUSP00000123931.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162650.7Link to Ensembl Protein Viewer:ENSMUSP00000123931.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162650Re-query CCDS DB by Protein ID:ENSMUSP00000123931
Original member Current member NCBI NM_010778.4 NP_034908.1 Accepted alive Link to Nucleotide Sequence:NM_010778.4Link to Protein Sequence:NP_034908.1Re-query CCDS DB by Nucleotide ID:NM_010778Re-query CCDS DB by Protein ID:NP_034908Link to BLAST:NP_034908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034908.1 365 O88174-1 365 100% 0 0

Chromosomal Locations for CCDS 35828.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 195041992 195042013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195062353 195062413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195064688 195064723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195068127 195068168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195075510 195075557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195077654 195077836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195082582 195082779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195083548 195083636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195085333 195085435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195086092 195086280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195092099 195092225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGACGGCGGCGCCTCTTATGCCAGACTCAACGCACCCCTGTCGCAGAAGGAAGAGCTACACTTTCTTCT
GGTGCTCCTTGGGCGTCTATGCTGAGGCCCTTCTGTTTCTGCTGTCTCATTTATCTGATGCCTGTGAACT
ACCACGGCCATTTGAAGCTATGGAACTCAAGGGTACACCTAAACTCTTTTATGCCGTTGGAGAGAAAATA
GAATATAAGTGTAAAAAAGGATACCTGTATCTGTCTCCATACCTGATGATTGCTACCTGTGAGCCAAATC
ATACATGGGTCCCTATTTCAGATGCTGGTTGTATTAAAGTTCAATGTACTATGTTACAAGACCCTTCATT
TGGCAAAGTATACTACATAGATGGCAGCTTTTCATGGGGTGCTCGAGCTAAATTTACTTGTATGGAAGGT
TATTACGTAGTTGGTATGTCAGTTCTACACTGTGTGCTTAAAGGTGATGATGAAGCATACTGGAATGGCT
ATCCCCCACATTGTGAAAAGATTTATTGTTTACCACCTCCAAAAATAAAAAATGGAACACATACCCTTAC
TGATATAAATGTATTCAAATACCATGAAGCAGTAAGTTACAGTTGTGATCCTACCCCAGGGCCAGATAAG
TTTTCCCTTGTTGGAACAAGCATGATATTCTGTGCTGGCCATAACACCTGGAGTAACAGCCCTCCGGAGT
GTAAAGTGGTAAAATGTCCAAATCCAGTACTACAAAATGGAAGACTGATATCAGGAGCTGGCGAAATATT
TTCCTATCAATCAACAGTGATGTTTGAGTGTTTGCAAGGATTTTACATGGAAGGCAGTAGCATGGTGATC
TGTAGTGCTAATAACTCTTGGGAGCCATCTATCCCAAAATGTCTTAAAGGTCCTAGGCCTACTCATCCTA
CCAAGCCTCCAGTTTATAATTATACAGGATATCCTAGTCCCCGTGAAGGAATATTTAGCCAAGAATTAGA
TGCATGGATTATTGCTTTGATTGTTATTACGTCAATTGTTGGAGTTTTTATACTTTGTCTCATTGTGCTC
AGGTGTTTTGAGCACAGGAAGAAAACAAATGTATCTGCAGCAAGATGA

Translation (365 aa):
MTAAPLMPDSTHPCRRRKSYTFFWCSLGVYAEALLFLLSHLSDACELPRPFEAMELKGTPKLFYAVGEKI
EYKCKKGYLYLSPYLMIATCEPNHTWVPISDAGCIKVQCTMLQDPSFGKVYYIDGSFSWGARAKFTCMEG
YYVVGMSVLHCVLKGDDEAYWNGYPPHCEKIYCLPPPKIKNGTHTLTDINVFKYHEAVSYSCDPTPGPDK
FSLVGTSMIFCAGHNTWSNSPPECKVVKCPNPVLQNGRLISGAGEIFSYQSTVMFECLQGFYMEGSSMVI
CSANNSWEPSIPKCLKGPRPTHPTKPPVYNYTGYPSPREGIFSQELDAWIIALIVITSIVGVFILCLIVL
RCFEHRKKTNVSAAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH