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Report for CCDS39554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39554.1 Public Mus musculus 6 Mcm2 23 108 98 CCDS HistoryNCBI Gene:17216Re-query CCDS DB by CCDS ID:39554.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058011.7 ENSMUSP00000061923.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058011.7Link to Ensembl Protein Viewer:ENSMUSP00000061923.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058011Re-query CCDS DB by Protein ID:ENSMUSP00000061923
Original member Current member NCBI NM_008564.2 NP_032590.2 Accepted alive Link to Nucleotide Sequence:NM_008564.2Link to Protein Sequence:NP_032590.2Re-query CCDS DB by Nucleotide ID:NM_008564Re-query CCDS DB by Protein ID:NP_032590Link to BLAST:NP_032590.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032590.2 904 P97310 904 100% 0 0

Chromosomal Locations for CCDS 39554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 88884000 88884110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88884376 88884531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88884682 88884864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88885844 88886095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88886961 88887073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88887501 88887627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88887720 88887970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88888172 88888265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88889014 88889205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88889788 88889922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88891673 88891880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88891976 88892195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88892945 88893205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88893338 88893513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88897287 88897516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 88898645 88898650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2715 nt):
ATGGCGGAGTCTTCTGAGTCTCTCTCAGCATCTAGCCCTGCCCGTCAGCGGCGCCGGATCAGTGATCCCC
TCACCTCCAGCCCAGGCCGCAGCTCCAGACGTGCTGACGCCCTGACCTCCAGCCCTGGCAGAGACCTCCC
CCCATTTGAAGATGAGTCTGAGGGGCTGCTGGGCACAGAGGGGCCCATGGAGGAAGAAGAGGATGGAGAG
GAACTCATTGGTGATGGCATGGAGAGAGACTACCGTCCCATTCCGGAGCTCGATGTCTACGAGGCCGAGG
GATTGGCCCTGGATGATGAAGATGTGGAGGAGCTGACAGCCAGTCAGAGAGAGGCAGCTGAGCGGACCAT
GAGGCAGCGGGACCGTGAGGCTGGCAGAGGCCTGGGACGCATGCGCCGGGGGCTGCTCTATGACAGCAGC
GAGGAAGATGAGGAGCGGCCTGCCCGTAAGCGCCGCCACGTAGAACGCGCCACAGAGGATGGCGAGGAGG
ATGAAGAGATGATCGAGAGTATTGAGAATCTGGAGGACCTCAAGGGCCACTCGGTGCGCGAGTGGGTGAG
CATGGCAGGGCCCAGGCTGGAGATCCACCACCGCTTCAAGAACTTCCTGCGCACCCACGTGGACAGCCAT
GGCCACAACGTCTTCAAGGAGCGCATCAGTGATATGTGCAAAGAGAACCGTGAGAGTTTGGTGGTAAATT
ATGAAGACCTGGCAGCCCGGGAGCACGTGTTGGCATACTTCCTGCCGGAAGCACCGGCTGAGTTGCTGCA
GATCTTTGACGAGGCTGCCCTGGAGGTCGTGTTGGCCATGTACCCTAAATATGACCGTATCACCAACCAC
ATCCATGTGCGCATCTCCCACCTGCCTCTGGTGGAGGAGCTGCGTTCACTGAGGCAGTTGCACCTGAACC
AGCTGATCCGTACCAGTGGCGTGGTGACCAGCTGCACCGGAGTCCTGCCCCAGCTCAGCATGGTCAAGTA
CAACTGTAGCAAGTGCAACTTTGTACTGGGGCCTTTCTGCCAGTCTCAGAATCAGGAGGTGAAGCCTGGC
TCCTGCCCTGAGTGCCAGTCTGCTGGGCCCTTTGAGATCAACATGGAGGAGACCATCTATCAGAACTACC
AACGTATCCGCATCCAGGAGAGTCCCGGCAAGGTGGCGGCTGGCCGACTGCCCCGTTCCAAGGATGCCAT
TCTCCTCGCTGATCTGGTGGACAGCTGCAAGCCAGGGGACGAGATAGAGCTGACCGGCATTTACCATAAT
AACTATGACGGCTCGCTTAACACCGCCAACGGCTTTCCAGTCTTTGCCACTATTATCTTGGCCAACCATG
TTGCCAAGAAGGACAACAAAGTAGCTGTGGGGGAGCTCACCGATGAGGACGTGAAGATGATCACCGGTCT
CTCCAAGGATCAGCAAATTGGAGAGAAGATCTTTGCCAGCATTGCACCCTCCATCTATGGGCATGAAGAC
ATCAAGAGAGGCCTGGCTCTGGCCCTGTTTGGAGGGGAGCCCAAGAACCCAGGTGGAAAGCACAAGGTTC
GAGGTGACATTAATGTGCTCTTGTGTGGGGACCCTGGCACAGCAAAGTCCCAATTCCTCAAATACATCGA
GAAAGTGTCTAGCCGTGCCATCTTCACCACTGGCCAGGGTGCGTCAGCAGTGGGTCTCACCGCGTACGTT
CAGCGGCATCCCGTCAGCAGAGAGTGGACCTTAGAGGCGGGAGCCCTGGTTCTGGCTGACCGGGGGGTGT
GTCTCATTGACGAGTTTGACAAGATGAATGACCAGGACAGGACCAGCATCCACGAGGCCATGGAACAGCA
AAGCATCTCCATCTCCAAGGCTGGCATCGTTACCTCGCTGCAAGCCCGCTGCACTGTCATAGCTGCTGCC
AACCCCATAGGAGGCCGCTACGACCCTTCACTGACCTTCTCAGAGAATGTAGACCTCACAGAGCCCATCA
TTTCCCGCTTTGATGTCCTGTGTGTGGTGAGGGACACTGTTGATCCAGTTCAGGATGAGATGCTGGCCCG
CTTTGTGGTTGGCAGCCACGTCAGACACCACCCCAGTAACAAGAAGGATGAAGGGTTGACTAATGGTGGC
ACCTTGGAGCCAGCCATGCCCAACACATATGGCGTGGAGCCCCTGCCTCAGGAGGTGCTGAAGAAGTATA
TCATCTATGCCAAGGAGAGGGTCCGCCCGAAGCTCAACCAGATGGACCAGGATAAAGTGGCCAGGATGTA
CAGTGACCTGAGGAAGGAGTCCATGGCAACGGGCAGCATTCCCATCACGGTGCGCCACATCGAGTCCATG
ATCCGCATGGCCGAGGCCCATGCCCGCATGCACCTGCGGGACTACGTGATGGAAGACGATGTCAACATGG
CCATCCGAGTGATGATGGAGAGCTTCATTGACACCCAGAAGTTCAGCGTCATGCGGAGTATGCGCAAGAC
TTTTGCCCGGTATCTCTCCTTCCGGCGAGATAACAATGATCTGCTGCTCTTCATACTGAAGCAGTTGGTG
GCTGAGCAGGTGACATATCAACGCAACCGCTTTGGGGCCCAGCAGGACACCATTGAAATACCTGAGAAGG
ATCTGATGGACAAGGCCAGGCAGATCAATATTCACAACCTCTCTGCCTTCTACGACAGCGACCTCTTCAA
ATTCAACAAGTTCAGCCGTGACCTGAAACGCAAACTGATCCTACAGCAGTTCTGA

Translation (904 aa):
MAESSESLSASSPARQRRRISDPLTSSPGRSSRRADALTSSPGRDLPPFEDESEGLLGTEGPMEEEEDGE
ELIGDGMERDYRPIPELDVYEAEGLALDDEDVEELTASQREAAERTMRQRDREAGRGLGRMRRGLLYDSS
EEDEERPARKRRHVERATEDGEEDEEMIESIENLEDLKGHSVREWVSMAGPRLEIHHRFKNFLRTHVDSH
GHNVFKERISDMCKENRESLVVNYEDLAAREHVLAYFLPEAPAELLQIFDEAALEVVLAMYPKYDRITNH
IHVRISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCSKCNFVLGPFCQSQNQEVKPG
SCPECQSAGPFEINMEETIYQNYQRIRIQESPGKVAAGRLPRSKDAILLADLVDSCKPGDEIELTGIYHN
NYDGSLNTANGFPVFATIILANHVAKKDNKVAVGELTDEDVKMITGLSKDQQIGEKIFASIAPSIYGHED
IKRGLALALFGGEPKNPGGKHKVRGDINVLLCGDPGTAKSQFLKYIEKVSSRAIFTTGQGASAVGLTAYV
QRHPVSREWTLEAGALVLADRGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAA
NPIGGRYDPSLTFSENVDLTEPIISRFDVLCVVRDTVDPVQDEMLARFVVGSHVRHHPSNKKDEGLTNGG
TLEPAMPNTYGVEPLPQEVLKKYIIYAKERVRPKLNQMDQDKVARMYSDLRKESMATGSIPITVRHIESM
IRMAEAHARMHLRDYVMEDDVNMAIRVMMESFIDTQKFSVMRSMRKTFARYLSFRRDNNDLLLFILKQLV
AEQVTYQRNRFGAQQDTIEIPEKDLMDKARQINIHNLSAFYDSDLFKFNKFSRDLKRKLILQQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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