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Report for CCDS29142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29142.1 Public Mus musculus 18 Matr3 23 108 98 CCDS HistoryNCBI Gene:17184Re-query CCDS DB by CCDS ID:29142.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166793.9 ENSMUSP00000125761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166793.9Link to Ensembl Protein Viewer:ENSMUSP00000125761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166793Re-query CCDS DB by Protein ID:ENSMUSP00000125761
Original member Current member EBI ENSMUST00000235199.1 ENSMUSP00000158074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235199.1Link to Ensembl Protein Viewer:ENSMUSP00000158074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235199Re-query CCDS DB by Protein ID:ENSMUSP00000158074
Original member Current member EBI ENSMUST00000237744.1 ENSMUSP00000158537.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237744.1Link to Ensembl Protein Viewer:ENSMUSP00000158537.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237744Re-query CCDS DB by Protein ID:ENSMUSP00000158537
Original member NCBI NM_010771.6 NP_034901.2 Updated not alive Link to Nucleotide Sequence:NM_010771.6Link to Protein Sequence:NP_034901.2Re-query CCDS DB by Nucleotide ID:NM_010771Re-query CCDS DB by Protein ID:NP_034901
Current member NCBI NM_010771.7 NP_034901.2 Accepted alive Link to Nucleotide Sequence:NM_010771.7Link to Protein Sequence:NP_034901.2Re-query CCDS DB by Nucleotide ID:NM_010771Re-query CCDS DB by Protein ID:NP_034901Link to BLAST:NP_034901.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034901.2 846 Q8K310 846 100% 0 0

Chromosomal Locations for CCDS 29142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35572024 35572935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35577558 35577619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35578416 35578457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35578905 35579017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35579266 35579318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35581170 35581295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35581597 35581722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35581919 35582086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35582716 35582847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35583878 35583921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35584515 35584881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35587631 35587853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35588332 35588453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35590380 35590430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2541 nt):
ATGTCCAAGTCATTCCAGCAGTCATCTCTCGGTAGGGATTCACAGGGTCATGGGCGTGACCTGTCTGCAG
CAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAGTATGCCAGCATCTCTTGGAAGGATGAACCA
GGGTACTGCACGCCTTGCTAGTTTAATGAATCTTGGAATGAGTTCTTCATTGAATCAACAAGGAGCTCAT
AGTGCACTGTCTTCTGCTAGTACTTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTC
CACTCCCTTTGTCTTCTCAACACCGTGGAGATACAGACCAGGCCAGTAATATTTTGGCCAGCTTTGGTCT
GTCTGCTAGAGACTTAGATGAACTGAGTCGCTATCCAGAGGACAAGATTACTCCTGAGAACTTGCCCCAA
ATTCTTCTACAGCTTAAAAGGAGGAGAACTGAAGAAGGCCCTACATTGAGTTATGGTAGAGATGGCAGAT
CTGCTACACGGGAGCCACCATACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCACTTTAGAAGAGA
TAGTTTTGATGATCGTGGTCCTAGTCTCAACCCAGTGCTTGATTATGACCATGGAAGTCGTTCTCAAGAA
TCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTAAGAGATGGAGAAAGGTGTAGGGATGATT
CTTTTTTTGGTGAGACCTCGCATAACTATCATAAATTTGACAGTGAGTATGAGAGAATGGGACGTGGTCC
TGGCCCCTTACAAGAGAGATCTCTCTTTGAGAAAAAGAGGGGCGCTCCTCCAAGTAGCAATATTGAAGAC
TTCCATGGACTCTTACCGAAGGGTTATCCCCATCTGTGCTCTATATGTGATTTGCCAGTTCATTCTAATA
AGGAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAATCTACCC
AGAATGGAATCCTGACAATGATACTGGACACACAATGGGTGATCCATTCATGCTGCAGCAGTCTACAAAC
CCAGCACCAGGGATTCTGGGACCGCCGCCTCCTTCATTTCATCTTGGAGGACCAGCAGTTGGACCAAGAG
GAAATCTGGGTGCTGGTAATGGAAACCTACAAGGACCAAGACACATGCAAAAAGGCAGAGTGGAAACCAG
CCGAGTTGTTCACATTATGGATTTTCAGCGAGGAAAAAACTTGAGATACCAGCTGTTACAACTGGTAGAA
CCATTTGGAGTCATTTCAAATCATCTGATTTTAAATAAAATTAATGAGGCATTTATTGAAATGGCCACCA
CAGAAGATGCTCAGGCTGCTGTGGATTATTATACAACTACACCAGCATTAGTGTTTGGCAAGCCAGTGAG
AGTTCATTTATCCCAGAAGTATAAGAGAATAAAGAAACCTGAAGGAAAACCAGATCAGAAGTTTGATCAA
AAGCAAGAACTTGGTCGTGTGATACATCTCAGCAATTTACCTCATTCTGGCTATTCTGACAGTGCCGTCC
TCAAGCTTGCTGAGCCTTATGGGAAAATAAAGAATTATATCTTAATGAGGATGAAAAGTCAGGCTTTTAT
TGAGATGGAAACCAGAGAAGATGCAATGGCAATGGTTGACCACTGTTTAAAGAAGGCACTTTGGTTTCAG
GGGAGATGTGTTAAAGTTGATCTGTCTGAGAAATACAAAAAACTGGTGCTGCGGATTCCTAACAGAGGCA
TTGACTTACTGAAAAAAGATAAATCCCGGAAAAGATCCTATTCTCCAGATGGAAAAGAATCTCCAAGTGA
TAAGAAGTCCAAAACTGATGCTCAGAAGACTGAGAGTCCAGCTGAGGGTAAAGAACAAGAAGAGAAGTCG
GGTGAGGATGGTGAGAAGGACACCAAGGATGACCAGACAGAACAGGAGCCCAGCATGCTTCTTGAATCTG
AAGATGAACTGCTTGTTGATGAGGAAGAAGCTGCAGCACTACTAGAAAGTGGTAGTTCAGTGGGCGATGA
GACCGATCTTGCTAATTTAGGGGATGTATCTTCTGATGGGAAAAAGGAGCCTTCAGATAAAGCTGTGAAA
AAAGATCCAAGTGCTTCAGCAACATCCAAGAAAAAACTTAAAAAAGTGGACAAGATTGAGGAACTTGATC
AAGAAAATGAAGCTGCATTGGAAAATGGGATTAAAAATGAGGAAAATACAGAACCGGGTGCCGAATCTGC
TGAGAATGCTGATGATCCAAACAAAGACACAAGTGAAAATGCAGATGGCCAAAATGATGAGAATAAGGAG
GATTATACAATTCCCGATGAGTATAGAATCGGACCATATCAGCCTAATGTTCCTGTTGGTATAGACTATG
TGATACCTAAAACAGGGTTTTACTGTAAGCTGTGTTCACTCTTTTATACAAATGAAGAAGTTGCAAAGAA
TACTCATTGCAGCAGCCTTCCTCATTATCAGAAATTAAAGAAATTTCTGAATAAATTGGCAGAAGAACGG
AGGCAGAAGAAGGAAACTTAA

Translation (846 aa):
MSKSFQQSSLGRDSQGHGRDLSAAGIGLLAAATQSLSMPASLGRMNQGTARLASLMNLGMSSSLNQQGAH
SALSSASTSSHNLQSIFNIGSRGPLPLSSQHRGDTDQASNILASFGLSARDLDELSRYPEDKITPENLPQ
ILLQLKRRRTEEGPTLSYGRDGRSATREPPYRVPRDDWEEKRHFRRDSFDDRGPSLNPVLDYDHGSRSQE
SGYYDRMDYEDDRLRDGERCRDDSFFGETSHNYHKFDSEYERMGRGPGPLQERSLFEKKRGAPPSSNIED
FHGLLPKGYPHLCSICDLPVHSNKEWSQHINGASHSRRCQLLLEIYPEWNPDNDTGHTMGDPFMLQQSTN
PAPGILGPPPPSFHLGGPAVGPRGNLGAGNGNLQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVE
PFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIKKPEGKPDQKFDQ
KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQ
GRCVKVDLSEKYKKLVLRIPNRGIDLLKKDKSRKRSYSPDGKESPSDKKSKTDAQKTESPAEGKEQEEKS
GEDGEKDTKDDQTEQEPSMLLESEDELLVDEEEAAALLESGSSVGDETDLANLGDVSSDGKKEPSDKAVK
KDPSASATSKKKLKKVDKIEELDQENEAALENGIKNEENTEPGAESAENADDPNKDTSENADGQNDENKE
DYTIPDEYRIGPYQPNVPVGIDYVIPKTGFYCKLCSLFYTNEEVAKNTHCSSLPHYQKLKKFLNKLAEER
RQKKET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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