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Report for CCDS28938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28938.1 Public Mus musculus 17 Man2a1 23 108 98 CCDS HistoryNCBI Gene:17158Re-query CCDS DB by CCDS ID:28938.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086723.9 ENSMUSP00000083928.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086723.9Link to Ensembl Protein Viewer:ENSMUSP00000083928.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086723Re-query CCDS DB by Protein ID:ENSMUSP00000083928
Original member Current member NCBI NM_008549.2 NP_032575.2 Accepted alive Link to Nucleotide Sequence:NM_008549.2Link to Protein Sequence:NP_032575.2Re-query CCDS DB by Nucleotide ID:NM_008549Re-query CCDS DB by Protein ID:NP_032575Link to BLAST:NP_032575.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032575.2 1150 P27046 1150 100% 0 0

Chromosomal Locations for CCDS 28938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 64601736 64601870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64624528 64624779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64625307 64625451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64636484 64636655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64651196 64651323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64658901 64659074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64666737 64666923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64669412 64669589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64671848 64672050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64675065 64675247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64679752 64679866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64681555 64681625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64710704 64710869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64712252 64712473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64713562 64713684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64714598 64714712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64731204 64731337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64733724 64733865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64734934 64735067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64740680 64740883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64750784 64750894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 64752414 64752572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3453 nt):
ATGAAGTTAAGTCGCCAGTTCACCGTGTTTGGCAGCGCGATCTTCTGCGTCGTAATCTTCTCACTCTACC
TGATGCTGGACAGGGGTCACTTGGACTACCCTCGGGGCCCGCGCCAGGAGGGCTCCTTTCCGCAGGGCCA
GCTTTCAATATTGCAAGAAAAGATTGACCATTTGGAGCGTTTGCTCGCTGAGAACAACGAGATCATCTCA
AATATCAGAGACTCAGTCATCAACCTGAGCGAGTCTGTGGAGGACGGCCCGCGGGGGTCACCAGGCAACG
CCAGCCAAGGCTCCATCCACCTCCACTCGCCACAGTTGGCCCTGCAGGCTGACCCCAGAGACTGTTTGTT
TGCTTCACAGAGTGGGAGTCAGCCCCGGGATGTGCAGATGTTGGATGTTTACGATCTGATTCCTTTTGAT
AATCCAGATGGTGGAGTTTGGAAGCAAGGATTTGACATTAAGTATGAAGCGGATGAGTGGGACCATGAGC
CCCTGCAAGTGTTTGTGGTGCCTCACTCCCATAATGACCCAGGTTGGTTGAAGACTTTCAATGACTACTT
TAGAGACAAGACTCAGTATATTTTTAATAACATGGTCCTAAAGCTGAAAGAAGACTCAAGCAGGAAGTTT
ATGTGGTCTGAGATCTCTTACCTTGCAAAATGGTGGGATATTATAGATATTCCGAAGAAGGAAGCTGTTA
AAAGTTTACTACAGAATGGTCAGCTGGAAATTGTGACCGGTGGCTGGGTTATGCCTGATGAAGCCACTCC
ACATTATTTTGCCTTAATTGACCAACTAATTGAAGGGCACCAATGGCTGGAAAAAAATCTAGGAGTGAAA
CCTCGATCGGGCTGGGCCATAGATCCCTTTGGTCATTCACCCACAATGGCTTATCTTCTAAAGCGTGCTG
GATTTTCACACATGCTCATCCAGAGAGTCCATTATGCAATCAAAAAACACTTCTCTTTGCATAAAACGCT
GGAGTTTTTCTGGAGACAGAATTGGGATCTTGGATCTGCTACAGACATTTTGTGCCATATGATGCCCTTC
TACAGCTACGACATCCCTCACACCTGTGGGCCTGATCCTAAAATATGCTGCCAGTTTGATTTTAAACGGC
TTCCTGGAGGCAGATATGGTTGTCCCTGGGGAGTTCCCCCAGAAGCAATATCTCCTGGAAATGTCCAAAG
CAGGGCTCAGATGCTATTGGATCAGTACCGGAAAAAGTCAAAACTTTTCCGCACTAAAGTTCTGCTGGCT
CCACTGGGAGACGACTTTCGGTTCAGTGAATACACAGAGTGGGATCTGCAGTGCAGGAACTACGAGCAAC
TGTTCAGTTACATGAACTCGCAGCCTCATCTGAAAGTGAAGATCCAGTTTGGAACCTTGTCAGATTATTT
CGACGCATTGGAGAAAGCGGTGGCAGCCGAGAAGAAGAGTAGCCAGTCTGTGTTCCCTGCCCTGAGTGGA
GACTTCTTCACGTACGCTGACAGAGACGACCATTACTGGAGTGGCTACTTCACGTCCAGACCTTTCTACA
AACGAATGGACAGAATAATGGAATCTCGTATAAGGGCTGCTGAAATTCTTTACCAGTTGGCCTTGAAACA
AGCTCAGAAATACAAGATAAATAAATTTCTTTCATCACCTCATTACACAACACTGACAGAAGCCAGAAGG
AACTTAGGACTATTTCAGCATCATGATGCCATCACAGGAACCGCGAAAGACTGGGTGGTTGTGGACTATG
GTACCAGACTCTTTCAGTCATTAAATTCTTTGGAGAAGATAATTGGAGATTCTGCATTTCTTCTCATTTT
AAAGGACAAAAAGCTGTACCAGTCAGATCCTTCCAAAGCCTTCTTAGAGATGGATACGAAGCAAAGTTCA
CAAGATTCTCTGCCCCAAAAAATTATAATACAACTGAGCGCACAGGAGCCAAGGTACCTTGTGGTCTACA
ATCCCTTTGAACAAGAACGGCATTCAGTGGTGTCCATCCGGGTAAACTCCGCCACAGTGAAAGTGCTGTC
TGATTCGGGAAAACCGGTGGAGGTTCAAGTCAGTGCAGTTTGGAACGACATGAGGACAATTTCACAAGCA
GCCTATGAGGTTTCTTTTCTAGCTCATATACCACCACTGGGACTGAAAGTGTTTAAGATCTTAGAGTCAC
AAAGTTCAAGCTCACACTTGGCTGATTATGTCCTATATAATAATGATGGACTAGCAGAAAATGGAATATT
CCACGTGAAGAACATGGTGGATGCTGGAGATGCCATAACAATAGAGAATCCCTTCCTGGCGATTTGGTTT
GACCGATCTGGGCTGATGGAGAAAGTGAGAAGGAAAGAAGACAGTAGACAGCATGAACTGAAGGTCCAGT
TCCTGTGGTACGGAACCACCAACAAAAGGGACAAGAGCGGTGCCTACCTCTTCCTGCCTGACGGGCAGGG
CCAGCCATATGTTTCCCTAAGACCGCCCTTTGTCAGAGTGACACGTGGAAGGATCTACTCAGATGTGACC
TGTTTCCTCGAACACGTTACTCACAAAGTCCGCCTGTACAACATTCAGGGAATAGAAGGTCAGTCCATGG
AAGTTTCTAATATTGTAAACATCAGGAATGTGCATAACCGTGAGATTGTAATGAGAATTTCATCTAAAAT
AAACAACCAAAATAGATATTATACTGACCTAAATGGATATCAGATTCAGCCTAGAAGGACCATGAGCAAA
TTGCCTCTTCAAGCCAACGTTTACCCGATGTGCACAATGGCGTATATCCAGGATGCTGAGCACCGGCTCA
CGCTGCTCTCTGCTCAGTCTCTAGGTGCTTCCAGCATGGCTTCTGGTCAGATTGAAGTCTTCATGGATCG
AAGGCTCATGCAGGATGATAACCGTGGCCTTGGGCAAGGCGTCCATGACAATAAGATTACAGCTAATTTG
TTTCGAATCCTCCTCGAGAAGAGAAGCGCTGTGAACATGGAAGAAGAAAAGAAGAGCCCTGTCAGCTACC
CTTCCCTCCTCAGCCACATGACTTCGTCCTTCCTCAACCATCCCTTTCTCCCCATGGTACTAAGTGGCCA
GCTCCCCTCCCCTGCCTTTGAGCTGCTGAGTGAATTTCCTCTGCTGCAGTCCTCTCTACCTTGTGATATC
CATCTGGTCAACCTGCGGACAATACAATCAAAGATGGGCAAAGGCTATTCGGATGAGGCAGCCTTGATCC
TCCACAGGAAAGGGTTTGATTGCCAGTTCTCCAGCAGAGGCATCGGGCTACCCTGTTCCACTACTCAGGG
AAAGATGTCAGTTCTGAAACTTTTCAACAAGTTTGCTGTGGAGAGTCTCGTCCCTTCCTCTCTGTCCTTG
ATGCACTCCCCTCCAGATGCCCAGAACATGAGTGAAGTCAGCCTGAGCCCCATGGAGATCAGCACGTTCC
GTATCCGCTTGCGTTGGACCTGA

Translation (1150 aa):
MKLSRQFTVFGSAIFCVVIFSLYLMLDRGHLDYPRGPRQEGSFPQGQLSILQEKIDHLERLLAENNEIIS
NIRDSVINLSESVEDGPRGSPGNASQGSIHLHSPQLALQADPRDCLFASQSGSQPRDVQMLDVYDLIPFD
NPDGGVWKQGFDIKYEADEWDHEPLQVFVVPHSHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSSRKF
MWSEISYLAKWWDIIDIPKKEAVKSLLQNGQLEIVTGGWVMPDEATPHYFALIDQLIEGHQWLEKNLGVK
PRSGWAIDPFGHSPTMAYLLKRAGFSHMLIQRVHYAIKKHFSLHKTLEFFWRQNWDLGSATDILCHMMPF
YSYDIPHTCGPDPKICCQFDFKRLPGGRYGCPWGVPPEAISPGNVQSRAQMLLDQYRKKSKLFRTKVLLA
PLGDDFRFSEYTEWDLQCRNYEQLFSYMNSQPHLKVKIQFGTLSDYFDALEKAVAAEKKSSQSVFPALSG
DFFTYADRDDHYWSGYFTSRPFYKRMDRIMESRIRAAEILYQLALKQAQKYKINKFLSSPHYTTLTEARR
NLGLFQHHDAITGTAKDWVVVDYGTRLFQSLNSLEKIIGDSAFLLILKDKKLYQSDPSKAFLEMDTKQSS
QDSLPQKIIIQLSAQEPRYLVVYNPFEQERHSVVSIRVNSATVKVLSDSGKPVEVQVSAVWNDMRTISQA
AYEVSFLAHIPPLGLKVFKILESQSSSSHLADYVLYNNDGLAENGIFHVKNMVDAGDAITIENPFLAIWF
DRSGLMEKVRRKEDSRQHELKVQFLWYGTTNKRDKSGAYLFLPDGQGQPYVSLRPPFVRVTRGRIYSDVT
CFLEHVTHKVRLYNIQGIEGQSMEVSNIVNIRNVHNREIVMRISSKINNQNRYYTDLNGYQIQPRRTMSK
LPLQANVYPMCTMAYIQDAEHRLTLLSAQSLGASSMASGQIEVFMDRRLMQDDNRGLGQGVHDNKITANL
FRILLEKRSAVNMEEEKKSPVSYPSLLSHMTSSFLNHPFLPMVLSGQLPSPAFELLSEFPLLQSSLPCDI
HLVNLRTIQSKMGKGYSDEAALILHRKGFDCQFSSRGIGLPCSTTQGKMSVLKLFNKFAVESLVPSSLSL
MHSPPDAQNMSEVSLSPMEISTFRIRLRWT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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